(21 nodes) 90S preribosome network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fbxw9	F-box and WD repeat domain containing 9. (500 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (663 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (891 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
	bop1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (734 aa)
	rsl24d1	Ribosomal L24 domain containing 1. (164 aa)
	nol6	Nucleolar protein 6. (1117 aa)
	imp3	IMP U3 small nucleolar ribonucleoprotein 3. (186 aa)
	utp18	WD_REPEATS_REGION domain-containing protein. (506 aa)
	cmss1	Cms1 ribosomal small subunit homolog. (295 aa)
	LOC109507199	Si:ch211-197l9.5. (582 aa)
	utp20	UTP20 small subunit processome component. (2738 aa)
	noc2l	NOC2-like nucleolar associated transcriptional repressor. (760 aa)
	fbxw12	Si:ch73-142c19.1. (476 aa)
	nsa2	NSA2 ribosome biogenesis homolog (S. cerevisiae). (267 aa)
	noc4l	Nucleolar complex associated 4 homolog. (530 aa)
	pes1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (588 aa)
	utp6	UTP6 small subunit processome component. (595 aa)
	wdr3	WD repeat domain 3. (957 aa)
	imp4	IMP U3 small nucleolar ribonucleoprotein 4. (313 aa)
	rrp7a	Ribosomal RNA processing 7 homolog A. (318 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bop1	imp3	ENSHCOP00000027141	ENSHCOP00000028141	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	IMP U3 small nucleolar ribonucleoprotein 3.	0.530
bop1	imp4	ENSHCOP00000027141	ENSHCOP00000017760	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	IMP U3 small nucleolar ribonucleoprotein 4.	0.770
bop1	mphosph10	ENSHCOP00000027141	ENSHCOP00000021270	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.675
bop1	noc2l	ENSHCOP00000027141	ENSHCOP00000004209	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOC2-like nucleolar associated transcriptional repressor.	0.990
bop1	noc4l	ENSHCOP00000027141	ENSHCOP00000011475	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar complex associated 4 homolog.	0.680
bop1	nol6	ENSHCOP00000027141	ENSHCOP00000027829	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar protein 6.	0.768
bop1	nop14	ENSHCOP00000027141	ENSHCOP00000023459	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOP14 nucleolar protein homolog (yeast).	0.789
bop1	nsa2	ENSHCOP00000027141	ENSHCOP00000006430	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NSA2 ribosome biogenesis homolog (S. cerevisiae).	0.973
bop1	pes1	ENSHCOP00000027141	ENSHCOP00000013455	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
bop1	rrp7a	ENSHCOP00000027141	ENSHCOP00000020053	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal RNA processing 7 homolog A.	0.501
bop1	rsl24d1	ENSHCOP00000027141	ENSHCOP00000027195	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal L24 domain containing 1.	0.973
bop1	utp18	ENSHCOP00000027141	ENSHCOP00000001282	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.942
bop1	utp20	ENSHCOP00000027141	ENSHCOP00000002557	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	UTP20 small subunit processome component.	0.715
bop1	utp6	ENSHCOP00000027141	ENSHCOP00000014012	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	UTP6 small subunit processome component.	0.769
bop1	wdr12	ENSHCOP00000027141	ENSHCOP00000023980	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.998
bop1	wdr3	ENSHCOP00000027141	ENSHCOP00000014144	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD repeat domain 3.	0.918
cmss1	noc2l	ENSHCOP00000002141	ENSHCOP00000004209	Cms1 ribosomal small subunit homolog.	NOC2-like nucleolar associated transcriptional repressor.	0.465
cmss1	noc4l	ENSHCOP00000002141	ENSHCOP00000011475	Cms1 ribosomal small subunit homolog.	Nucleolar complex associated 4 homolog.	0.436
cmss1	nol6	ENSHCOP00000002141	ENSHCOP00000027829	Cms1 ribosomal small subunit homolog.	Nucleolar protein 6.	0.500
cmss1	nop14	ENSHCOP00000002141	ENSHCOP00000023459	Cms1 ribosomal small subunit homolog.	NOP14 nucleolar protein homolog (yeast).	0.597