(5 nodes) Nuclear pore central transport channel network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109527999	NTF2 domain-containing protein. (133 aa)
	nutf2	Nuclear transport factor 2. (127 aa)
	nup62	Nsp1_C domain-containing protein. (534 aa)
	NUP54	Nucleoporin 54. (568 aa)
	nxt2	Nuclear transport factor 2-like export factor 2. (143 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109527999	NUP54	ENSHCOP00000015560	ENSHCOP00000027937	NTF2 domain-containing protein.	Nucleoporin 54.	0.515
LOC109527999	nup62	ENSHCOP00000015560	ENSHCOP00000008284	NTF2 domain-containing protein.	Nsp1_C domain-containing protein.	0.649
LOC109527999	nxt2	ENSHCOP00000015560	ENSHCOP00000018938	NTF2 domain-containing protein.	Nuclear transport factor 2-like export factor 2.	0.565
NUP54	LOC109527999	ENSHCOP00000027937	ENSHCOP00000015560	Nucleoporin 54.	NTF2 domain-containing protein.	0.515
NUP54	nup62	ENSHCOP00000027937	ENSHCOP00000008284	Nucleoporin 54.	Nsp1_C domain-containing protein.	0.999
NUP54	nutf2	ENSHCOP00000027937	ENSHCOP00000009767	Nucleoporin 54.	Nuclear transport factor 2.	0.615
NUP54	nxt2	ENSHCOP00000027937	ENSHCOP00000018938	Nucleoporin 54.	Nuclear transport factor 2-like export factor 2.	0.720
nup62	LOC109527999	ENSHCOP00000008284	ENSHCOP00000015560	Nsp1_C domain-containing protein.	NTF2 domain-containing protein.	0.649
nup62	NUP54	ENSHCOP00000008284	ENSHCOP00000027937	Nsp1_C domain-containing protein.	Nucleoporin 54.	0.999
nup62	nutf2	ENSHCOP00000008284	ENSHCOP00000009767	Nsp1_C domain-containing protein.	Nuclear transport factor 2.	0.751
nup62	nxt2	ENSHCOP00000008284	ENSHCOP00000018938	Nsp1_C domain-containing protein.	Nuclear transport factor 2-like export factor 2.	0.748
nutf2	NUP54	ENSHCOP00000009767	ENSHCOP00000027937	Nuclear transport factor 2.	Nucleoporin 54.	0.615
nutf2	nup62	ENSHCOP00000009767	ENSHCOP00000008284	Nuclear transport factor 2.	Nsp1_C domain-containing protein.	0.751
nutf2	nxt2	ENSHCOP00000009767	ENSHCOP00000018938	Nuclear transport factor 2.	Nuclear transport factor 2-like export factor 2.	0.565
nxt2	LOC109527999	ENSHCOP00000018938	ENSHCOP00000015560	Nuclear transport factor 2-like export factor 2.	NTF2 domain-containing protein.	0.565
nxt2	NUP54	ENSHCOP00000018938	ENSHCOP00000027937	Nuclear transport factor 2-like export factor 2.	Nucleoporin 54.	0.720
nxt2	nup62	ENSHCOP00000018938	ENSHCOP00000008284	Nuclear transport factor 2-like export factor 2.	Nsp1_C domain-containing protein.	0.748
nxt2	nutf2	ENSHCOP00000018938	ENSHCOP00000009767	Nuclear transport factor 2-like export factor 2.	Nuclear transport factor 2.	0.565