(18 nodes) Zinc finger, GATA-type network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mta2	Metastasis associated 1 family, member 2. (663 aa)
	LOC109522629	GATA binding protein 2a. (477 aa)
	trps1	Trichorhinophalangeal syndrome I. (1178 aa)
	rere	Arginine-glutamic acid dipeptide (RE) repeats a. (1526 aa)
	gatad2b	GATA zinc finger domain containing 2B. (549 aa)
	gata3	GATA binding protein 3. (450 aa)
	LOC109532150	GATA zinc finger domain containing 2Ab. (620 aa)
	gatad1	GATA zinc finger domain containing 1. (249 aa)
	LOC109521258	GATA binding protein 6. (363 aa)
	zglp1	GATA-type domain-containing protein. (489 aa)
	LOC109530221	Metastasis associated 1 family, member 3. (689 aa)
	LOC109531433	Arginine-glutamic acid dipeptide (RE) repeats b. (782 aa)
	mta1	Metastasis associated 1. (617 aa)
	gata4	GATA binding protein 4. (409 aa)
	gata5	GATA binding protein 5. (393 aa)
	GATA2	GATA binding protein 2. (434 aa)
	LOC109521629	GATA binding protein 1a. (416 aa)
	LOC109507328	Uncharacterized protein. (719 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GATA2	LOC109521629	ENSHCOP00000002963	ENSHCOP00000002614	GATA binding protein 2.	GATA binding protein 1a.	0.417
GATA2	trps1	ENSHCOP00000002963	ENSHCOP00000025483	GATA binding protein 2.	Trichorhinophalangeal syndrome I.	0.411
LOC109507328	LOC109530221	ENSHCOP00000000362	ENSHCOP00000013220	Uncharacterized protein.	Metastasis associated 1 family, member 3.	0.673
LOC109507328	mta1	ENSHCOP00000000362	ENSHCOP00000011174	Uncharacterized protein.	Metastasis associated 1.	0.673
LOC109507328	mta2	ENSHCOP00000000362	ENSHCOP00000022529	Uncharacterized protein.	Metastasis associated 1 family, member 2.	0.673
LOC109521258	trps1	ENSHCOP00000014112	ENSHCOP00000025483	GATA binding protein 6.	Trichorhinophalangeal syndrome I.	0.436
LOC109521629	GATA2	ENSHCOP00000002614	ENSHCOP00000002963	GATA binding protein 1a.	GATA binding protein 2.	0.417
LOC109521629	LOC109522629	ENSHCOP00000002614	ENSHCOP00000025874	GATA binding protein 1a.	GATA binding protein 2a.	0.418
LOC109521629	gata3	ENSHCOP00000002614	ENSHCOP00000019172	GATA binding protein 1a.	GATA binding protein 3.	0.413
LOC109521629	trps1	ENSHCOP00000002614	ENSHCOP00000025483	GATA binding protein 1a.	Trichorhinophalangeal syndrome I.	0.436
LOC109522629	LOC109521629	ENSHCOP00000025874	ENSHCOP00000002614	GATA binding protein 2a.	GATA binding protein 1a.	0.418
LOC109522629	trps1	ENSHCOP00000025874	ENSHCOP00000025483	GATA binding protein 2a.	Trichorhinophalangeal syndrome I.	0.411
LOC109530221	LOC109507328	ENSHCOP00000013220	ENSHCOP00000000362	Metastasis associated 1 family, member 3.	Uncharacterized protein.	0.673
LOC109530221	LOC109532150	ENSHCOP00000013220	ENSHCOP00000017674	Metastasis associated 1 family, member 3.	GATA zinc finger domain containing 2Ab.	0.673
LOC109530221	gatad2b	ENSHCOP00000013220	ENSHCOP00000019541	Metastasis associated 1 family, member 3.	GATA zinc finger domain containing 2B.	0.673
LOC109532150	LOC109530221	ENSHCOP00000017674	ENSHCOP00000013220	GATA zinc finger domain containing 2Ab.	Metastasis associated 1 family, member 3.	0.673
LOC109532150	mta1	ENSHCOP00000017674	ENSHCOP00000011174	GATA zinc finger domain containing 2Ab.	Metastasis associated 1.	0.673
LOC109532150	mta2	ENSHCOP00000017674	ENSHCOP00000022529	GATA zinc finger domain containing 2Ab.	Metastasis associated 1 family, member 2.	0.673
gata3	LOC109521629	ENSHCOP00000019172	ENSHCOP00000002614	GATA binding protein 3.	GATA binding protein 1a.	0.413
gata3	trps1	ENSHCOP00000019172	ENSHCOP00000025483	GATA binding protein 3.	Trichorhinophalangeal syndrome I.	0.411