27 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	IGFBP4	Insulin like growth factor binding protein 4. (261 aa)
	nid1	Nidogen 1a. (1207 aa)
	Spock1	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1. (405 aa)
	LOC109523153	Insulin-like growth factor binding protein 6b. (202 aa)
	LOC109519869	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3. (396 aa)
	Smoc1	SPARC related modular calcium binding 1. (491 aa)
	IGFBP3	Insulin like growth factor binding protein 3. (290 aa)
	ENSHCOP00000018037	Uncharacterized protein. (169 aa)
	ENSHCOP00000018058	Thyroglobulin type-1 domain-containing protein. (143 aa)
	LOC109523186	Epithelial cell adhesion molecule. (307 aa)
	LOC109515444	Insulin-like growth factor binding protein 5a. (268 aa)
	LOC109522365	Uncharacterized protein. (187 aa)
	LOC109521218	Insulin-like growth factor binding protein 1b. (242 aa)
	LOC109508979	Thyroglobulin type-1 domain-containing protein. (92 aa)
	LOC109524746	Insulin-like growth factor binding protein 1a. (263 aa)
	LOC109524696	Insulin-like growth factor binding protein 3. (357 aa)
	LOC109523185	Epithelial cell adhesion molecule. (320 aa)
	smoc2	SPARC related modular calcium binding 2. (406 aa)
	igfbp2	Insulin-like growth factor binding protein 2a. (284 aa)
	igfbp5	Insulin-like growth factor binding protein 5a. (256 aa)
	spock2	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2. (424 aa)
	ENSHCOP00000001350	Uncharacterized protein. (158 aa)
	ENSHCOP00000001341	Thyroglobulin type-1 domain-containing protein. (98 aa)
	ENSHCOP00000001339	Thyroglobulin type-1 domain-containing protein. (103 aa)
	ENSHCOP00000001300	Uncharacterized protein. (172 aa)
	ENSHCOP00000001290	Thyroglobulin type-1 domain-containing protein. (93 aa)
	LOC109518600	Uncharacterized protein. (389 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IGFBP3	LOC109524696	ENSHCOP00000016803	ENSHCOP00000006382	Insulin like growth factor binding protein 3.	Insulin-like growth factor binding protein 3.	0.902
LOC109508979	LOC109522365	ENSHCOP00000007456	ENSHCOP00000027750	Thyroglobulin type-1 domain-containing protein.	Uncharacterized protein.	0.585
LOC109508979	LOC109523153	ENSHCOP00000007456	ENSHCOP00000012170	Thyroglobulin type-1 domain-containing protein.	Insulin-like growth factor binding protein 6b.	0.621
LOC109522365	LOC109508979	ENSHCOP00000027750	ENSHCOP00000007456	Uncharacterized protein.	Thyroglobulin type-1 domain-containing protein.	0.585
LOC109523153	LOC109508979	ENSHCOP00000012170	ENSHCOP00000007456	Insulin-like growth factor binding protein 6b.	Thyroglobulin type-1 domain-containing protein.	0.621
LOC109524696	IGFBP3	ENSHCOP00000006382	ENSHCOP00000016803	Insulin-like growth factor binding protein 3.	Insulin like growth factor binding protein 3.	0.902