35 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109522387	Uncharacterized protein. (193 aa)
	LOC109511764	Uncharacterized protein. (262 aa)
	CDC42	Cell division cycle 42. (191 aa)
	LOC109509055	Uncharacterized protein. (95 aa)
	LOC109511299	Uncharacterized protein. (192 aa)
	rnd3	Rho family GTPase 3a. (243 aa)
	RAC1	Rac family small GTPase 1. (192 aa)
	LOC109519341	Rho family GTPase 2. (234 aa)
	LOC109528056	Uncharacterized protein. (191 aa)
	LOC109509630	Uncharacterized protein. (214 aa)
	LOC109531368	Uncharacterized protein. (193 aa)
	LOC109530709	Rho related BTB domain containing 4. (734 aa)
	LOC109512648	Uncharacterized protein. (234 aa)
	LOC109507788	Uncharacterized protein. (193 aa)
	LOC109527036	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (609 aa)
	rhoq	Ras homolog family member Q. (207 aa)
	LOC109526350	Ras homolog family member Ub. (244 aa)
	LOC109509216	Uncharacterized protein. (185 aa)
	RHOB	Ras homolog family member B. (200 aa)
	LOC109531556	Uncharacterized protein. (259 aa)
	rhot2	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (618 aa)
	LOC109515379	Uncharacterized protein. (191 aa)
	LOC109511185	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (581 aa)
	rhobtb2	Rho related BTB domain containing 2a. (689 aa)
	LOC109529292	Rac family small GTPase 3b. (124 aa)
	LOC109515160	Uncharacterized protein. (192 aa)
	LOC109521595	Uncharacterized protein. (191 aa)
	RND1	Rho family GTPase 1. (232 aa)
	ENSHCOP00000028104	Rho family GTPase 2. (209 aa)
	rhof	Ras homolog family member F. (211 aa)
	LOC109528419	Ras homolog gene family, member Aa. (193 aa)
	rhoh	Ras homolog family member H. (189 aa)
	rhov	Ras homolog family member V. (236 aa)
	ENSHCOP00000001889	Ras homolog gene family, member Gd. (156 aa)
	LOC109512466	Ras homolog family member Gb. (191 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	ENSHCOP00000001889	ENSHCOP00000005967	ENSHCOP00000001889	Cell division cycle 42.	Ras homolog gene family, member Gd.	0.488
CDC42	LOC109507788	ENSHCOP00000005967	ENSHCOP00000017424	Cell division cycle 42.	Uncharacterized protein.	0.491
CDC42	LOC109511299	ENSHCOP00000005967	ENSHCOP00000007629	Cell division cycle 42.	Uncharacterized protein.	0.575
CDC42	LOC109511764	ENSHCOP00000005967	ENSHCOP00000005171	Cell division cycle 42.	Uncharacterized protein.	0.490
CDC42	LOC109512466	ENSHCOP00000005967	ENSHCOP00000003073	Cell division cycle 42.	Ras homolog family member Gb.	0.483
CDC42	LOC109515160	ENSHCOP00000005967	ENSHCOP00000026894	Cell division cycle 42.	Uncharacterized protein.	0.575
CDC42	LOC109522387	ENSHCOP00000005967	ENSHCOP00000004882	Cell division cycle 42.	Uncharacterized protein.	0.490
CDC42	LOC109526350	ENSHCOP00000005967	ENSHCOP00000020673	Cell division cycle 42.	Ras homolog family member Ub.	0.409
CDC42	LOC109528419	ENSHCOP00000005967	ENSHCOP00000001291	Cell division cycle 42.	Ras homolog gene family, member Aa.	0.491
CDC42	LOC109529292	ENSHCOP00000005967	ENSHCOP00000026731	Cell division cycle 42.	Rac family small GTPase 3b.	0.579
CDC42	LOC109531368	ENSHCOP00000005967	ENSHCOP00000015776	Cell division cycle 42.	Uncharacterized protein.	0.491
CDC42	LOC109531556	ENSHCOP00000005967	ENSHCOP00000024815	Cell division cycle 42.	Uncharacterized protein.	0.407
CDC42	RAC1	ENSHCOP00000005967	ENSHCOP00000011151	Cell division cycle 42.	Rac family small GTPase 1.	0.575
CDC42	RHOB	ENSHCOP00000005967	ENSHCOP00000022445	Cell division cycle 42.	Ras homolog family member B.	0.493
CDC42	RND1	ENSHCOP00000005967	ENSHCOP00000027435	Cell division cycle 42.	Rho family GTPase 1.	0.447
CDC42	rhof	ENSHCOP00000005967	ENSHCOP00000001026	Cell division cycle 42.	Ras homolog family member F.	0.437
CDC42	rhoh	ENSHCOP00000005967	ENSHCOP00000001321	Cell division cycle 42.	Ras homolog family member H.	0.404
CDC42	rhov	ENSHCOP00000005967	ENSHCOP00000001432	Cell division cycle 42.	Ras homolog family member V.	0.416
CDC42	rnd3	ENSHCOP00000005967	ENSHCOP00000010640	Cell division cycle 42.	Rho family GTPase 3a.	0.433
ENSHCOP00000001889	CDC42	ENSHCOP00000001889	ENSHCOP00000005967	Ras homolog gene family, member Gd.	Cell division cycle 42.	0.488