10 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109532526	Uncharacterized protein. (1579 aa)
	ENSHCOP00000006319	Nuclear receptor coactivator 2. (1028 aa)
	LOC109518905	Uncharacterized protein. (1412 aa)
	ncoa1	Nuclear receptor coactivator 1. (1506 aa)
	NCOA3	Nuclear receptor coactivator 3. (1503 aa)
	LOC109527342	CREB binding protein a. (2447 aa)
	LOC109521541	Nuclear receptor coactivator 3. (1528 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	LOC109532549	CREB binding protein b. (1735 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000006319	LOC109512841	ENSHCOP00000006319	ENSHCOP00000007909	Nuclear receptor coactivator 2.	E1A binding protein p300 a.	0.625
ENSHCOP00000006319	LOC109514850	ENSHCOP00000006319	ENSHCOP00000024673	Nuclear receptor coactivator 2.	E1A binding protein p300 b.	0.625
ENSHCOP00000006319	LOC109527342	ENSHCOP00000006319	ENSHCOP00000017333	Nuclear receptor coactivator 2.	CREB binding protein a.	0.611
ENSHCOP00000006319	LOC109532526	ENSHCOP00000006319	ENSHCOP00000006363	Nuclear receptor coactivator 2.	Uncharacterized protein.	0.611
ENSHCOP00000006319	LOC109532549	ENSHCOP00000006319	ENSHCOP00000021630	Nuclear receptor coactivator 2.	CREB binding protein b.	0.611
ENSHCOP00000006319	ncoa1	ENSHCOP00000006319	ENSHCOP00000010836	Nuclear receptor coactivator 2.	Nuclear receptor coactivator 1.	0.426
LOC109512841	ENSHCOP00000006319	ENSHCOP00000007909	ENSHCOP00000006319	E1A binding protein p300 a.	Nuclear receptor coactivator 2.	0.625
LOC109512841	LOC109518905	ENSHCOP00000007909	ENSHCOP00000008835	E1A binding protein p300 a.	Uncharacterized protein.	0.625
LOC109512841	LOC109521541	ENSHCOP00000007909	ENSHCOP00000018495	E1A binding protein p300 a.	Nuclear receptor coactivator 3.	0.625
LOC109512841	LOC109527342	ENSHCOP00000007909	ENSHCOP00000017333	E1A binding protein p300 a.	CREB binding protein a.	0.853
LOC109512841	LOC109532526	ENSHCOP00000007909	ENSHCOP00000006363	E1A binding protein p300 a.	Uncharacterized protein.	0.853
LOC109512841	LOC109532549	ENSHCOP00000007909	ENSHCOP00000021630	E1A binding protein p300 a.	CREB binding protein b.	0.852
LOC109512841	NCOA3	ENSHCOP00000007909	ENSHCOP00000015418	E1A binding protein p300 a.	Nuclear receptor coactivator 3.	0.625
LOC109512841	ncoa1	ENSHCOP00000007909	ENSHCOP00000010836	E1A binding protein p300 a.	Nuclear receptor coactivator 1.	0.625
LOC109514850	ENSHCOP00000006319	ENSHCOP00000024673	ENSHCOP00000006319	E1A binding protein p300 b.	Nuclear receptor coactivator 2.	0.625
LOC109514850	LOC109518905	ENSHCOP00000024673	ENSHCOP00000008835	E1A binding protein p300 b.	Uncharacterized protein.	0.625
LOC109514850	LOC109521541	ENSHCOP00000024673	ENSHCOP00000018495	E1A binding protein p300 b.	Nuclear receptor coactivator 3.	0.625
LOC109514850	LOC109527342	ENSHCOP00000024673	ENSHCOP00000017333	E1A binding protein p300 b.	CREB binding protein a.	0.853
LOC109514850	LOC109532526	ENSHCOP00000024673	ENSHCOP00000006363	E1A binding protein p300 b.	Uncharacterized protein.	0.852
LOC109514850	LOC109532549	ENSHCOP00000024673	ENSHCOP00000021630	E1A binding protein p300 b.	CREB binding protein b.	0.853