22 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mysm1	Myb-like, SWIRM and MPN domains 1. (715 aa)
	LOC109531433	Arginine-glutamic acid dipeptide (RE) repeats b. (782 aa)
	LOC109530221	Metastasis associated 1 family, member 3. (689 aa)
	mier3	Mesoderm induction early response 1, family member 3 b. (518 aa)
	rcor3	Uncharacterized protein. (480 aa)
	LOC109528127	ELM2 and Myb/SANT-like domain containing 1b. (966 aa)
	mta1	Metastasis associated 1. (617 aa)
	ncor2	Nuclear receptor corepressor 2. (2225 aa)
	tada2b	Transcriptional adapter. (499 aa)
	mier1	Mesoderm induction early response 1b, transcriptional regulator. (498 aa)
	rere	Arginine-glutamic acid dipeptide (RE) repeats a. (1526 aa)
	LOC109508031	ELM2 and Myb/SANT-like domain containing 1a. (1034 aa)
	ncor1	Nuclear receptor corepressor 1. (2383 aa)
	LOC109513544	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b. (931 aa)
	smarca5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1035 aa)
	rcor2	REST corepressor 2. (518 aa)
	rcor1	REST corepressor 1. (436 aa)
	smarcc2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2. (1006 aa)
	tada2a	Transcriptional adapter. (473 aa)
	cramp1	Cramped chromatin regulator homolog 1. (1155 aa)
	smarcc1	Uncharacterized protein. (1119 aa)
	mta2	Metastasis associated 1 family, member 2. (663 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109513544	smarca5	ENSHCOP00000008654	ENSHCOP00000004067	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.639
LOC109513544	smarcc2	ENSHCOP00000008654	ENSHCOP00000017099	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2.	0.426
LOC109530221	rcor1	ENSHCOP00000013220	ENSHCOP00000000107	Metastasis associated 1 family, member 3.	REST corepressor 1.	0.434
LOC109530221	rcor2	ENSHCOP00000013220	ENSHCOP00000000555	Metastasis associated 1 family, member 3.	REST corepressor 2.	0.434
LOC109530221	rcor3	ENSHCOP00000013220	ENSHCOP00000014521	Metastasis associated 1 family, member 3.	Uncharacterized protein.	0.434
LOC109530221	smarca5	ENSHCOP00000013220	ENSHCOP00000004067	Metastasis associated 1 family, member 3.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.441
mta1	rcor1	ENSHCOP00000011174	ENSHCOP00000000107	Metastasis associated 1.	REST corepressor 1.	0.434
mta1	rcor2	ENSHCOP00000011174	ENSHCOP00000000555	Metastasis associated 1.	REST corepressor 2.	0.434
mta1	rcor3	ENSHCOP00000011174	ENSHCOP00000014521	Metastasis associated 1.	Uncharacterized protein.	0.434
mta1	smarca5	ENSHCOP00000011174	ENSHCOP00000004067	Metastasis associated 1.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.441
mta2	rcor1	ENSHCOP00000022529	ENSHCOP00000000107	Metastasis associated 1 family, member 2.	REST corepressor 1.	0.434
mta2	rcor2	ENSHCOP00000022529	ENSHCOP00000000555	Metastasis associated 1 family, member 2.	REST corepressor 2.	0.434
mta2	rcor3	ENSHCOP00000022529	ENSHCOP00000014521	Metastasis associated 1 family, member 2.	Uncharacterized protein.	0.434
mta2	smarca5	ENSHCOP00000022529	ENSHCOP00000004067	Metastasis associated 1 family, member 2.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.441
mysm1	smarca5	ENSHCOP00000026320	ENSHCOP00000004067	Myb-like, SWIRM and MPN domains 1.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.	0.706
ncor1	tada2a	ENSHCOP00000022282	ENSHCOP00000027166	Nuclear receptor corepressor 1.	Transcriptional adapter.	0.711
ncor1	tada2b	ENSHCOP00000022282	ENSHCOP00000025654	Nuclear receptor corepressor 1.	Transcriptional adapter.	0.765
ncor2	tada2a	ENSHCOP00000010931	ENSHCOP00000027166	Nuclear receptor corepressor 2.	Transcriptional adapter.	0.711
ncor2	tada2b	ENSHCOP00000010931	ENSHCOP00000025654	Nuclear receptor corepressor 2.	Transcriptional adapter.	0.765
rcor1	LOC109530221	ENSHCOP00000000107	ENSHCOP00000013220	REST corepressor 1.	Metastasis associated 1 family, member 3.	0.434