(36 nodes) Zinc finger, C3HC4 RING-type network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHCOP00000011599	B box-type domain-containing protein. (433 aa)
	rnf170	Ring finger protein 170. (269 aa)
	rnf180	RING-type domain-containing protein. (384 aa)
	pex2	Peroxisomal biogenesis factor 2. (313 aa)
	rnf32	Ring finger protein 32. (328 aa)
	rnf10	Ring finger protein 10. (781 aa)
	RNF222	Ring finger protein 222. (202 aa)
	LOC109517945	Deltex 2, E3 ubiquitin ligase. (672 aa)
	mkrn1	Makorin, ring finger protein, 1. (417 aa)
	LOC109531301	SH3 domain containing ring finger 3. (766 aa)
	LOC109521104	Tripartite motif containing 46a. (763 aa)
	LOC109520368	Deltex 4, E3 ubiquitin ligase a. (732 aa)
	trim13	Tripartite motif containing 13. (381 aa)
	LOC109511914	Uncharacterized protein. (398 aa)
	BFAR	Bifunctional apoptosis regulator. (480 aa)
	LOC109514558	Tripartite motif containing 46b. (765 aa)
	traf3	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (579 aa)
	traf4	TNF receptor-associated factor. (470 aa)
	brca1	Uncharacterized protein. (1141 aa)
	trim62	Tripartite motif containing 62, tandem duplicate 1. (475 aa)
	trim65	Tripartite motif containing 65. (512 aa)
	LOC109516488	Si:dkey-46i9.6. (547 aa)
	LOC109516490	Bloodthirsty-related gene family, member 12. (584 aa)
	shprh	SNF2 histone linker PHD RING helicase. (1573 aa)
	LOC109532224	Si:dkey-183n20.15. (184 aa)
	rnf20	E3 ubiquitin protein ligase. (941 aa)
	LOC109513388	Uncharacterized protein. (699 aa)
	LOC109530187	E3 ubiquitin protein ligase. (1004 aa)
	scaf11	RING-type domain-containing protein. (1186 aa)
	LOC109520405	TNF receptor-associated factor. (487 aa)
	ENSHCOP00000018684	RING-type domain-containing protein. (86 aa)
	LOC109510598	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (501 aa)
	ENSHCOP00000012645	Uncharacterized protein. (460 aa)
	LOC109521685	Uncharacterized protein. (752 aa)
	DTX1	Deltex E3 ubiquitin ligase 1. (631 aa)
	mkrn2	Makorin, ring finger protein, 2. (415 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109510598	traf3	ENSHCOP00000001096	ENSHCOP00000017219	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.707
LOC109520405	traf3	ENSHCOP00000018839	ENSHCOP00000017219	TNF receptor-associated factor.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.707
LOC109530187	rnf20	ENSHCOP00000025047	ENSHCOP00000026044	E3 ubiquitin protein ligase.	E3 ubiquitin protein ligase.	0.756
rnf20	LOC109530187	ENSHCOP00000026044	ENSHCOP00000025047	E3 ubiquitin protein ligase.	E3 ubiquitin protein ligase.	0.756
traf3	LOC109510598	ENSHCOP00000017219	ENSHCOP00000001096	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.707
traf3	LOC109520405	ENSHCOP00000017219	ENSHCOP00000018839	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor.	0.707