STRINGSTRING
lsm12 lsm12 lsm5 lsm5 lsm8 lsm8 ENSHCOP00000003512 ENSHCOP00000003512 lsm11 lsm11 lsm4 lsm4 naa38 naa38 ENSHCOP00000008145 ENSHCOP00000008145 snrpd3 snrpd3 snrpg snrpg lsm1 lsm1 ENSHCOP00000015111 ENSHCOP00000015111 LSM14B LSM14B snrpe snrpe atxn2 atxn2 lsm6 lsm6 Lsm14a Lsm14a gemin7 gemin7 ENSHCOP00000021958 ENSHCOP00000021958 LOC109508638 LOC109508638 snrpd2 snrpd2 lsm3 lsm3 lsm2 lsm2 snrpb snrpb edc3 edc3 lsm7 lsm7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lsm12LSM12 homolog b. (196 aa)
lsm5LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (59 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
ENSHCOP00000003512LSM14 domain-containing protein. (109 aa)
lsm11LSM11, U7 small nuclear RNA associated. (319 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (142 aa)
naa38N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (118 aa)
ENSHCOP00000008145Sm domain-containing protein. (51 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
ENSHCOP00000015111Small nuclear ribonucleoprotein polypeptide F. (128 aa)
LSM14BLSM family member 14B. (370 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
atxn2Ataxin 2. (1079 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
Lsm14aLSM14 domain-containing protein. (99 aa)
gemin7Gem (nuclear organelle) associated protein 7. (128 aa)
ENSHCOP00000021958LSM14 domain-containing protein. (101 aa)
LOC109508638Sm domain-containing protein. (65 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (238 aa)
edc3Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (474 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (101 aa)
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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