45 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hsp90ab1	Heat shock protein 90, alpha (cytosolic), class B member 1. (723 aa)
	tax1bp1	Tax1 (human T-cell leukemia virus type I) binding protein 1b. (830 aa)
	vwc2	Von Willebrand factor C domain containing 2. (294 aa)
	REL	REL proto-oncogene, NF-kB subunit. (628 aa)
	rnf216	Ring finger protein 216. (1051 aa)
	LOC109525796	Inhibitor of nuclear factor kappa B kinase subunit beta. (674 aa)
	ENSHCOP00000005874	EF-hand domain-containing protein. (90 aa)
	LOC109532526	Uncharacterized protein. (1579 aa)
	ENSHCOP00000006379	Protein kinase domain-containing protein. (137 aa)
	LOC109522194	Inhibitor of nuclear factor kappa B kinase subunit epsilon. (708 aa)
	ENSHCOP00000006772	Uncharacterized protein. (615 aa)
	LOC109519522	ANK_REP_REGION domain-containing protein. (340 aa)
	LOC109530495	Interferon regulatory factor 7. (399 aa)
	LOC109508419	V-rel avian reticuloendotheliosis viral oncogene homolog A. (627 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	LOC109507844	High mobility group box 1b. (201 aa)
	mavs	CARD_2 domain-containing protein. (300 aa)
	app	Amyloid beta precursor protein. (773 aa)
	LOC109524673	Amyloid beta (A4) precursor protein b. (755 aa)
	LOC109531013	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1. (725 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (610 aa)
	LOC109518553	Protein kinase domain-containing protein. (796 aa)
	nfkb2	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100). (879 aa)
	LOC109508122	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (283 aa)
	LOC109527342	CREB binding protein a. (2447 aa)
	otud5	OTU deubiquitinase 5a. (506 aa)
	dhx58	DEXH (Asp-Glu-X-His) box polypeptide 58. (673 aa)
	nkiras2	NFKB inhibitor interacting Ras-like 2. (179 aa)
	ENSHCOP00000020570	TANK-binding kinase 1. (341 aa)
	LOC109531692	Basal cell adhesion molecule (Lutheran blood group). (606 aa)
	LOC109532549	CREB binding protein b. (1735 aa)
	LOC109508194	Uncharacterized protein. (90 aa)
	kxd1	KxDL motif containing 1. (185 aa)
	pin1	Peptidyl-prolyl cis-trans isomerase. (157 aa)
	LOC109517338	High mobility group box 1a. (208 aa)
	nlrx1	NLR family member X1. (968 aa)
	tomm70	Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae). (580 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109531014	Heat shock protein 90 alpha family class A member 1. (691 aa)
	LOC109516272	Component of inhibitor of nuclear factor kappa B kinase complex. (739 aa)
	LOC109512001	Tax1 (human T-cell leukemia virus type I) binding protein 1a. (940 aa)
	LOC109523980	Interferon regulatory factor 3. (464 aa)
	LOC109509783	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (753 aa)
	nfkb1	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1. (784 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000006379	LOC109512001	ENSHCOP00000006379	ENSHCOP00000025991	Protein kinase domain-containing protein.	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	0.560
ENSHCOP00000006379	LOC109523980	ENSHCOP00000006379	ENSHCOP00000027090	Protein kinase domain-containing protein.	Interferon regulatory factor 3.	0.869
ENSHCOP00000006379	LOC109530495	ENSHCOP00000006379	ENSHCOP00000007522	Protein kinase domain-containing protein.	Interferon regulatory factor 7.	0.538
ENSHCOP00000006379	ikbkg	ENSHCOP00000006379	ENSHCOP00000011809	Protein kinase domain-containing protein.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.690
ENSHCOP00000006379	mavs	ENSHCOP00000006379	ENSHCOP00000008979	Protein kinase domain-containing protein.	CARD_2 domain-containing protein.	0.481
ENSHCOP00000006379	nlrx1	ENSHCOP00000006379	ENSHCOP00000023729	Protein kinase domain-containing protein.	NLR family member X1.	0.441
ENSHCOP00000006379	otud5	ENSHCOP00000006379	ENSHCOP00000018430	Protein kinase domain-containing protein.	OTU deubiquitinase 5a.	0.405
ENSHCOP00000006379	rnf216	ENSHCOP00000006379	ENSHCOP00000005530	Protein kinase domain-containing protein.	Ring finger protein 216.	0.447
ENSHCOP00000006379	tax1bp1	ENSHCOP00000006379	ENSHCOP00000004049	Protein kinase domain-containing protein.	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	0.634
ENSHCOP00000006379	tnfaip3	ENSHCOP00000006379	ENSHCOP00000001357	Protein kinase domain-containing protein.	Tumor necrosis factor, alpha-induced protein 3.	0.605
ENSHCOP00000006772	LOC109508419	ENSHCOP00000006772	ENSHCOP00000007695	Uncharacterized protein.	V-rel avian reticuloendotheliosis viral oncogene homolog A.	0.659
ENSHCOP00000006772	LOC109512841	ENSHCOP00000006772	ENSHCOP00000007909	Uncharacterized protein.	E1A binding protein p300 a.	0.854
ENSHCOP00000006772	LOC109514850	ENSHCOP00000006772	ENSHCOP00000024673	Uncharacterized protein.	E1A binding protein p300 b.	0.854
ENSHCOP00000006772	LOC109523980	ENSHCOP00000006772	ENSHCOP00000027090	Uncharacterized protein.	Interferon regulatory factor 3.	0.908
ENSHCOP00000006772	LOC109530495	ENSHCOP00000006772	ENSHCOP00000007522	Uncharacterized protein.	Interferon regulatory factor 7.	0.607
ENSHCOP00000006772	LOC109532549	ENSHCOP00000006772	ENSHCOP00000021630	Uncharacterized protein.	CREB binding protein b.	0.925
ENSHCOP00000006772	REL	ENSHCOP00000006772	ENSHCOP00000005169	Uncharacterized protein.	REL proto-oncogene, NF-kB subunit.	0.659
ENSHCOP00000006772	nfkb1	ENSHCOP00000006772	ENSHCOP00000002000	Uncharacterized protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.	0.552
ENSHCOP00000006772	nfkb2	ENSHCOP00000006772	ENSHCOP00000014733	Uncharacterized protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	0.552
ENSHCOP00000020570	LOC109512001	ENSHCOP00000020570	ENSHCOP00000025991	TANK-binding kinase 1.	Tax1 (human T-cell leukemia virus type I) binding protein 1a.	0.588