20 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Chst14	Carbohydrate sulfotransferase. (308 aa)
	LOC109520641	Versican a. (578 aa)
	ENSHCOP00000013017	Carbohydrate sulfotransferase. (276 aa)
	ENSHCOP00000011101	Brevican. (792 aa)
	ENSHCOP00000000126	C-type lectin domain-containing protein. (199 aa)
	ENSHCOP00000000337	Uncharacterized protein. (826 aa)
	ENSHCOP00000000835	Uncharacterized protein. (763 aa)
	bgn	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (371 aa)
	BCAN	Brevican. (825 aa)
	LOC109526987	Si:dkey-193c22.2. (2407 aa)
	dcn	Decorin; May affect the rate of fibrils formation. (363 aa)
	cspg5	Chondroitin sulfate proteoglycan 5a. (440 aa)
	dse	Dermatan sulfate epimerase. (767 aa)
	LOC109513546	Chondroitin sulfate proteoglycan 5b. (478 aa)
	cspg4	Chondroitin sulfate proteoglycan 4. (2302 aa)
	ENSHCOP00000019472	Si:dkeyp-41f9.3. (922 aa)
	ENSHCOP00000019463	Uncharacterized protein. (328 aa)
	ENSHCOP00000018702	C-type lectin domain-containing protein. (165 aa)
	DSEL	Dermatan sulfate epimerase like a. (1202 aa)
	ENSHCOP00000016398	Uncharacterized protein. (263 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCAN	ENSHCOP00000000835	ENSHCOP00000002360	ENSHCOP00000000835	Brevican.	Uncharacterized protein.	0.529
BCAN	LOC109520641	ENSHCOP00000002360	ENSHCOP00000013967	Brevican.	Versican a.	0.529
BCAN	cspg5	ENSHCOP00000002360	ENSHCOP00000010150	Brevican.	Chondroitin sulfate proteoglycan 5a.	0.450
Chst14	dcn	ENSHCOP00000014005	ENSHCOP00000009719	Carbohydrate sulfotransferase.	Decorin; May affect the rate of fibrils formation.	0.500
ENSHCOP00000000126	ENSHCOP00000011101	ENSHCOP00000000126	ENSHCOP00000011101	C-type lectin domain-containing protein.	Brevican.	0.404
ENSHCOP00000000126	ENSHCOP00000016398	ENSHCOP00000000126	ENSHCOP00000016398	C-type lectin domain-containing protein.	Uncharacterized protein.	0.899
ENSHCOP00000000126	ENSHCOP00000018702	ENSHCOP00000000126	ENSHCOP00000018702	C-type lectin domain-containing protein.	C-type lectin domain-containing protein.	0.422
ENSHCOP00000000337	ENSHCOP00000016398	ENSHCOP00000000337	ENSHCOP00000016398	Uncharacterized protein.	Uncharacterized protein.	0.535
ENSHCOP00000000835	BCAN	ENSHCOP00000000835	ENSHCOP00000002360	Uncharacterized protein.	Brevican.	0.529
ENSHCOP00000000835	ENSHCOP00000011101	ENSHCOP00000000835	ENSHCOP00000011101	Uncharacterized protein.	Brevican.	0.529
ENSHCOP00000000835	ENSHCOP00000018702	ENSHCOP00000000835	ENSHCOP00000018702	Uncharacterized protein.	C-type lectin domain-containing protein.	0.529
ENSHCOP00000000835	LOC109513546	ENSHCOP00000000835	ENSHCOP00000022905	Uncharacterized protein.	Chondroitin sulfate proteoglycan 5b.	0.438
ENSHCOP00000000835	bgn	ENSHCOP00000000835	ENSHCOP00000001205	Uncharacterized protein.	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.	0.411
ENSHCOP00000000835	dcn	ENSHCOP00000000835	ENSHCOP00000009719	Uncharacterized protein.	Decorin; May affect the rate of fibrils formation.	0.702
ENSHCOP00000011101	ENSHCOP00000000126	ENSHCOP00000011101	ENSHCOP00000000126	Brevican.	C-type lectin domain-containing protein.	0.404
ENSHCOP00000011101	ENSHCOP00000000835	ENSHCOP00000011101	ENSHCOP00000000835	Brevican.	Uncharacterized protein.	0.529
ENSHCOP00000011101	LOC109520641	ENSHCOP00000011101	ENSHCOP00000013967	Brevican.	Versican a.	0.529
ENSHCOP00000011101	cspg5	ENSHCOP00000011101	ENSHCOP00000010150	Brevican.	Chondroitin sulfate proteoglycan 5a.	0.450
ENSHCOP00000013017	dcn	ENSHCOP00000013017	ENSHCOP00000009719	Carbohydrate sulfotransferase.	Decorin; May affect the rate of fibrils formation.	0.500
ENSHCOP00000016398	ENSHCOP00000000126	ENSHCOP00000016398	ENSHCOP00000000126	Uncharacterized protein.	C-type lectin domain-containing protein.	0.899