82 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109515737	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor). (756 aa)
	LOC109520327	Estrogen receptor 2b. (541 aa)
	RXRB	Retinoid X receptor beta. (470 aa)
	LOC109522440	Retinoic acid receptor, gamma b. (501 aa)
	LOC109531343	Uncharacterized protein. (511 aa)
	LOC109532369	Uncharacterized protein. (465 aa)
	LOC109528320	Estrogen-related receptor gamma a. (450 aa)
	ENSHCOP00000026966	Pkinase_Tyr domain-containing protein. (176 aa)
	LOC109506918	Uncharacterized protein. (414 aa)
	nrbf2	Nuclear receptor binding factor 2b. (334 aa)
	NR3C1	Nuclear receptor subfamily 3 group C member 1. (786 aa)
	rora	RAR-related orphan receptor A, paralog a. (475 aa)
	pgr	Progesterone receptor. (629 aa)
	LOC109516786	Estrogen-related receptor gamma b. (417 aa)
	RARA	Retinoic acid receptor alpha. (477 aa)
	LOC109532288	RAR-related orphan receptor C a. (450 aa)
	LOC109522239	Vitamin D receptor b. (409 aa)
	nr5a2	Nuclear receptor subfamily 5, group A, member 2. (521 aa)
	LOC109512216	Nuclear receptor subfamily 2, group F, member 5. (410 aa)
	ncor1	Nuclear receptor corepressor 1. (2383 aa)
	nr2f6	Nuclear receptor subfamily 2, group F, member 6b. (382 aa)
	LOC109513116	Uncharacterized protein. (256 aa)
	nr1d2	Nuclear receptor subfamily 1, group D, member 2a. (588 aa)
	nr3c2	Nuclear receptor subfamily 3, group C, member 2. (940 aa)
	nr0b2	Nuclear receptor subfamily 0, group B, member 2a. (255 aa)
	ENSHCOP00000019901	NR LBD domain-containing protein. (287 aa)
	ENSHCOP00000019898	Nuclear receptor domain-containing protein. (217 aa)
	nrbp1	Nuclear receptor binding protein 1. (533 aa)
	ENSHCOP00000019590	Uncharacterized protein. (429 aa)
	NR2E3	Nuclear receptor subfamily 2 group E member 3. (314 aa)
	LOC109513171	Nuclear receptor subfamily 2 group F member 2. (419 aa)
	LOC109517754	Nuclear receptor subfamily 1, group H, member 5. (488 aa)
	cep55	Centrosomal protein 55 like. (494 aa)
	nr6a1	Nuclear receptor subfamily 6, group A, member 1a. (446 aa)
	nr5a1	Nuclear receptor subfamily 5, group A, member 1a. (471 aa)
	LOC109508990	Estrogen-related receptor alpha. (433 aa)
	nr2c2ap	Nuclear receptor 2C2-associated protein. (142 aa)
	LOC109522595	Nuclear receptor subfamily 1, group D, member 4b. (570 aa)
	PPARG	Peroxisome proliferator activated receptor gamma. (575 aa)
	LOC109531321	Nuclear receptor subfamily 1, group D, member 4a. (571 aa)
	nr2f1	Nuclear receptor subfamily 2, group F, member 1a. (411 aa)
	nr1h3	Nuclear receptor subfamily 1, group H, member 3. (462 aa)
	LOC109522594	Uncharacterized protein. (577 aa)
	ENSHCOP00000014580	VWFD domain-containing protein. (108 aa)
	LOC109528377	Uncharacterized protein. (581 aa)
	rorb	RAR-related orphan receptor B. (484 aa)
	LOC109522485	Retinoic acid receptor, alpha a. (455 aa)
	thra	Thyroid hormone receptor alpha. (401 aa)
	Med1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1528 aa)
	LOC109507685	Thyroid hormone receptor beta. (447 aa)
	esr1	Estrogen receptor 1. (651 aa)
	LOC109508899	Nuclear receptor subfamily 5, group A, member 5. (536 aa)
	ESRRB	Estrogen-related receptor beta. (433 aa)
	nr2e1	Nuclear receptor subfamily 2, group E, member 1. (385 aa)
	LOC109511576	Nuclear receptor subfamily 4, group A, member 2b. (596 aa)
	ncor2	Nuclear receptor corepressor 2. (2225 aa)
	LOC109518888	Nuclear receptor subfamily 2, group F, member 6a. (405 aa)
	LOC109530282	Retinoid X receptor, alpha a. (444 aa)
	LOC109515575	Hepatocyte nuclear factor 4, gamma. (422 aa)
	LOC109523728	Peroxisome proliferator-activated receptor alpha a. (479 aa)
	LOC109517612	Uncharacterized protein. (421 aa)
	cnfn	Cornifelin. (112 aa)
	LOC109522948	Nuclear receptor subfamily 2, group C, member 1. (605 aa)
	nr1h4	Nuclear receptor subfamily 1, group H, member 4. (476 aa)
	LOC109515081	Plac8 onzin related protein 3. (127 aa)
	LOC109513030	Uncharacterized protein. (541 aa)
	LOC109516302	Estrogen receptor 2a. (548 aa)
	hnf4a	Hepatocyte nuclear factor 4, alpha. (454 aa)
	ppard	Peroxisome proliferator-activated receptor delta b. (375 aa)
	LOC109528390	Nuclear receptor subfamily 2, group C, member 2. (580 aa)
	ENSHCOP00000006095	Uncharacterized protein. (340 aa)
	ENSHCOP00000005599	NR LBD domain-containing protein. (218 aa)
	AR	Androgen receptor. (703 aa)
	ENSHCOP00000005582	Nuclear receptor domain-containing protein. (300 aa)
	LOC109518279	Thyroid hormone receptor beta. (380 aa)
	ccdc134	Si:dkey-167k11.5. (227 aa)
	LOC109521045	Uncharacterized protein. (410 aa)
	PPARA	Peroxisome proliferator-activated receptor alpha b. (430 aa)
	nr4a3	Nuclear receptor subfamily 4, group A, member 3. (609 aa)
	LOC109524475	Uncharacterized protein. (661 aa)
	NR0B1	Nuclear receptor subfamily 0 group B member 1. (321 aa)
	LOC109507366	RAR-related orphan receptor C b. (503 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AR	LOC109515737	ENSHCOP00000005587	ENSHCOP00000004201	Androgen receptor.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.487
AR	LOC109524475	ENSHCOP00000005587	ENSHCOP00000002512	Androgen receptor.	Uncharacterized protein.	0.906
AR	NR0B1	ENSHCOP00000005587	ENSHCOP00000002165	Androgen receptor.	Nuclear receptor subfamily 0 group B member 1.	0.416
AR	NR3C1	ENSHCOP00000005587	ENSHCOP00000025493	Androgen receptor.	Nuclear receptor subfamily 3 group C member 1.	0.487
AR	ncor1	ENSHCOP00000005587	ENSHCOP00000022282	Androgen receptor.	Nuclear receptor corepressor 1.	0.751
AR	ncor2	ENSHCOP00000005587	ENSHCOP00000010931	Androgen receptor.	Nuclear receptor corepressor 2.	0.751
AR	nr3c2	ENSHCOP00000005587	ENSHCOP00000020074	Androgen receptor.	Nuclear receptor subfamily 3, group C, member 2.	0.537
AR	pgr	ENSHCOP00000005587	ENSHCOP00000023410	Androgen receptor.	Progesterone receptor.	0.565
ENSHCOP00000005582	ENSHCOP00000005599	ENSHCOP00000005582	ENSHCOP00000005599	Nuclear receptor domain-containing protein.	NR LBD domain-containing protein.	0.631
ENSHCOP00000005582	ncor1	ENSHCOP00000005582	ENSHCOP00000022282	Nuclear receptor domain-containing protein.	Nuclear receptor corepressor 1.	0.461
ENSHCOP00000005582	ncor2	ENSHCOP00000005582	ENSHCOP00000010931	Nuclear receptor domain-containing protein.	Nuclear receptor corepressor 2.	0.461
ENSHCOP00000005599	ENSHCOP00000005582	ENSHCOP00000005599	ENSHCOP00000005582	NR LBD domain-containing protein.	Nuclear receptor domain-containing protein.	0.631
ENSHCOP00000005599	ncor1	ENSHCOP00000005599	ENSHCOP00000022282	NR LBD domain-containing protein.	Nuclear receptor corepressor 1.	0.461
ENSHCOP00000005599	ncor2	ENSHCOP00000005599	ENSHCOP00000010931	NR LBD domain-containing protein.	Nuclear receptor corepressor 2.	0.461
ENSHCOP00000006095	LOC109508990	ENSHCOP00000006095	ENSHCOP00000016551	Uncharacterized protein.	Estrogen-related receptor alpha.	0.532
ENSHCOP00000006095	NR0B1	ENSHCOP00000006095	ENSHCOP00000002165	Uncharacterized protein.	Nuclear receptor subfamily 0 group B member 1.	0.505
ENSHCOP00000006095	ncor1	ENSHCOP00000006095	ENSHCOP00000022282	Uncharacterized protein.	Nuclear receptor corepressor 1.	0.602
ENSHCOP00000006095	ncor2	ENSHCOP00000006095	ENSHCOP00000010931	Uncharacterized protein.	Nuclear receptor corepressor 2.	0.602
ENSHCOP00000019590	LOC109517612	ENSHCOP00000019590	ENSHCOP00000009982	Uncharacterized protein.	Uncharacterized protein.	0.700
ENSHCOP00000019590	LOC109522595	ENSHCOP00000019590	ENSHCOP00000016304	Uncharacterized protein.	Nuclear receptor subfamily 1, group D, member 4b.	0.700