15 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSHCOP00000022996	DH domain-containing protein. (286 aa)
	rock2	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1338 aa)
	RHOB	Ras homolog family member B. (200 aa)
	LOC109507342	Semaphorin 4e; Belongs to the semaphorin family. (625 aa)
	arhgef12	Rho guanine nucleotide exchange factor (GEF) 12a. (1394 aa)
	LOC109531368	Uncharacterized protein. (193 aa)
	LOC109507788	Uncharacterized protein. (193 aa)
	rock1	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1333 aa)
	ENSHCOP00000011970	Uncharacterized protein; Belongs to the semaphorin family. (621 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (891 aa)
	LOC109511764	Uncharacterized protein. (262 aa)
	LOC109522387	Uncharacterized protein. (193 aa)
	LOC109528419	Ras homolog gene family, member Aa. (193 aa)
	RND1	Rho family GTPase 1. (232 aa)
	erbb2	Receptor protein-tyrosine kinase. (1296 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000011970	RND1	ENSHCOP00000011970	ENSHCOP00000027435	Uncharacterized protein; Belongs to the semaphorin family.	Rho family GTPase 1.	0.516
ENSHCOP00000011970	rock1	ENSHCOP00000011970	ENSHCOP00000014302	Uncharacterized protein; Belongs to the semaphorin family.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.424
ENSHCOP00000011970	rock2	ENSHCOP00000011970	ENSHCOP00000022494	Uncharacterized protein; Belongs to the semaphorin family.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.424
ENSHCOP00000022996	LOC109507788	ENSHCOP00000022996	ENSHCOP00000017424	DH domain-containing protein.	Uncharacterized protein.	0.600
ENSHCOP00000022996	LOC109511764	ENSHCOP00000022996	ENSHCOP00000005171	DH domain-containing protein.	Uncharacterized protein.	0.600
ENSHCOP00000022996	LOC109522387	ENSHCOP00000022996	ENSHCOP00000004882	DH domain-containing protein.	Uncharacterized protein.	0.600
ENSHCOP00000022996	LOC109528419	ENSHCOP00000022996	ENSHCOP00000001291	DH domain-containing protein.	Ras homolog gene family, member Aa.	0.600
ENSHCOP00000022996	LOC109531368	ENSHCOP00000022996	ENSHCOP00000015776	DH domain-containing protein.	Uncharacterized protein.	0.600
ENSHCOP00000022996	RHOB	ENSHCOP00000022996	ENSHCOP00000022445	DH domain-containing protein.	Ras homolog family member B.	0.600
ENSHCOP00000022996	RND1	ENSHCOP00000022996	ENSHCOP00000027435	DH domain-containing protein.	Rho family GTPase 1.	0.601
ENSHCOP00000022996	rock1	ENSHCOP00000022996	ENSHCOP00000014302	DH domain-containing protein.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.408
ENSHCOP00000022996	rock2	ENSHCOP00000022996	ENSHCOP00000022494	DH domain-containing protein.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.408
LOC109507342	RND1	ENSHCOP00000017522	ENSHCOP00000027435	Semaphorin 4e; Belongs to the semaphorin family.	Rho family GTPase 1.	0.516
LOC109507342	rock1	ENSHCOP00000017522	ENSHCOP00000014302	Semaphorin 4e; Belongs to the semaphorin family.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.424
LOC109507342	rock2	ENSHCOP00000017522	ENSHCOP00000022494	Semaphorin 4e; Belongs to the semaphorin family.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.424
LOC109507788	ENSHCOP00000022996	ENSHCOP00000017424	ENSHCOP00000022996	Uncharacterized protein.	DH domain-containing protein.	0.600
LOC109507788	arhgef12	ENSHCOP00000017424	ENSHCOP00000004257	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 12a.	0.600
LOC109507788	rock1	ENSHCOP00000017424	ENSHCOP00000014302	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
LOC109507788	rock2	ENSHCOP00000017424	ENSHCOP00000022494	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
LOC109511764	ENSHCOP00000022996	ENSHCOP00000005171	ENSHCOP00000022996	Uncharacterized protein.	DH domain-containing protein.	0.600