68 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psmd3	Proteasome 26S subunit, non-ATPase 3. (520 aa)
	psmb3	Proteasome subunit beta. (205 aa)
	LOC109514590	Proteasome 26S subunit, non-ATPase 4a. (373 aa)
	psmd5	Proteasome 26S subunit, non-ATPase 5. (504 aa)
	psmd10	Proteasome 26S subunit, non-ATPase 10. (226 aa)
	psmd13	Proteasome 26S subunit, non-ATPase 13. (378 aa)
	smurf1	E3 ubiquitin-protein ligase. (731 aa)
	LOC109529021	VWFA domain-containing protein. (374 aa)
	LOC109528718	Prickle homolog 2a. (897 aa)
	LOC109523674	Prickle homolog 1b. (918 aa)
	LOC109524773	PCI domain-containing protein. (389 aa)
	psmd1	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (959 aa)
	dvl2	Dishevelled segment polarity protein 2. (693 aa)
	ENSHCOP00000023550	Proteasome subunit beta. (281 aa)
	psmc2	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family. (433 aa)
	psmb7	Proteasome subunit beta. (277 aa)
	psmd6	Proteasome 26S subunit, non-ATPase 6. (389 aa)
	LOC109512258	Uncharacterized protein. (652 aa)
	psmd9	Proteasome 26S subunit, non-ATPase 9. (210 aa)
	LOC109530167	Proteasome 26S subunit, non-ATPase 11b. (422 aa)
	psmd7	Proteasome 26S subunit, non-ATPase 7. (326 aa)
	LOC109520775	Par-6 family cell polarity regulator alpha. (406 aa)
	ENSHCOP00000026565	DUF3437 domain-containing protein. (297 aa)
	psmd8	Proteasome 26S subunit, non-ATPase 8. (265 aa)
	psma4	Proteasome subunit alpha type. (261 aa)
	psmb4	Proteasome subunit beta; Belongs to the peptidase T1B family. (259 aa)
	psmd14	Proteasome 26S subunit, non-ATPase 14. (310 aa)
	psma8	Proteasome subunit alpha type. (251 aa)
	psma6	Proteasome subunit alpha type. (246 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	psmc1	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family. (440 aa)
	psmd12	Proteasome 26S subunit, non-ATPase 12. (456 aa)
	SMURF2	E3 ubiquitin-protein ligase. (754 aa)
	FZD7	Frizzled class receptor 7; Belongs to the G-protein coupled receptor Fz/Smo family. (525 aa)
	LOC109528579	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (704 aa)
	ENSHCOP00000014269	BLM10_mid domain-containing protein. (573 aa)
	psmc5	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (406 aa)
	psma1	Proteasome subunit alpha type. (264 aa)
	psmb5	Proteasome subunit beta. (272 aa)
	fzd4	Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family. (531 aa)
	psmc3	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family. (427 aa)
	psmb1	Proteasome subunit beta. (237 aa)
	psme4	Proteasome activator subunit 4a. (1777 aa)
	psmc6	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family. (389 aa)
	psmc4	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (417 aa)
	psmf1	Proteasome inhibitor subunit 1. (273 aa)
	ubc	Uncharacterized protein. (989 aa)
	LOC109510308	Uncharacterized protein. (814 aa)
	psme3	Proteasome activator subunit 3. (263 aa)
	LOC109518923	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (590 aa)
	ENSHCOP00000008693	Uncharacterized protein. (270 aa)
	psma2	Proteasome subunit alpha type. (234 aa)
	ubb	Ubiquitin B. (281 aa)
	psma5	Proteasome subunit alpha type. (233 aa)
	prickle3	Prickle homolog 3. (768 aa)
	LOC109508488	E3 ubiquitin-protein ligase. (727 aa)
	psme2	Proteasome activator subunit 2. (240 aa)
	psmb6	Proteasome subunit beta. (233 aa)
	Fzd2	Frizzled class receptor 2; Belongs to the G-protein coupled receptor Fz/Smo family. (548 aa)
	PRICKLE1	Prickle homolog 1a. (880 aa)
	psme1	Proteasome activator subunit 1. (249 aa)
	psmb2	Proteasome subunit beta. (202 aa)
	fzd3	Frizzled class receptor 3a; Belongs to the G-protein coupled receptor Fz/Smo family. (689 aa)
	ENSHCOP00000002151	Uncharacterized protein. (84 aa)
	LOC109510414	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (551 aa)
	psmb9	Proteasome subunit beta. (211 aa)
	psma3	Proteasome subunit alpha type. (255 aa)
	fzd8	Frizzled class receptor 8a; Belongs to the G-protein coupled receptor Fz/Smo family. (583 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000002151	ENSHCOP00000008693	ENSHCOP00000002151	ENSHCOP00000008693	Uncharacterized protein.	Uncharacterized protein.	0.934
ENSHCOP00000002151	ENSHCOP00000014269	ENSHCOP00000002151	ENSHCOP00000014269	Uncharacterized protein.	BLM10_mid domain-containing protein.	0.755
ENSHCOP00000002151	ENSHCOP00000023550	ENSHCOP00000002151	ENSHCOP00000023550	Uncharacterized protein.	Proteasome subunit beta.	0.981
ENSHCOP00000002151	ENSHCOP00000026565	ENSHCOP00000002151	ENSHCOP00000026565	Uncharacterized protein.	DUF3437 domain-containing protein.	0.755
ENSHCOP00000002151	LOC109514590	ENSHCOP00000002151	ENSHCOP00000018152	Uncharacterized protein.	Proteasome 26S subunit, non-ATPase 4a.	0.954
ENSHCOP00000002151	LOC109524773	ENSHCOP00000002151	ENSHCOP00000022201	Uncharacterized protein.	PCI domain-containing protein.	0.944
ENSHCOP00000002151	LOC109529021	ENSHCOP00000002151	ENSHCOP00000020927	Uncharacterized protein.	VWFA domain-containing protein.	0.954
ENSHCOP00000002151	LOC109530167	ENSHCOP00000002151	ENSHCOP00000025708	Uncharacterized protein.	Proteasome 26S subunit, non-ATPase 11b.	0.944
ENSHCOP00000002151	psma1	ENSHCOP00000002151	ENSHCOP00000013921	Uncharacterized protein.	Proteasome subunit alpha type.	0.995
ENSHCOP00000002151	psma2	ENSHCOP00000002151	ENSHCOP00000007766	Uncharacterized protein.	Proteasome subunit alpha type.	0.991
ENSHCOP00000002151	psma3	ENSHCOP00000002151	ENSHCOP00000000069	Uncharacterized protein.	Proteasome subunit alpha type.	0.992
ENSHCOP00000002151	psma4	ENSHCOP00000002151	ENSHCOP00000027003	Uncharacterized protein.	Proteasome subunit alpha type.	0.990
ENSHCOP00000002151	psma5	ENSHCOP00000002151	ENSHCOP00000007221	Uncharacterized protein.	Proteasome subunit alpha type.	0.995
ENSHCOP00000002151	psma6	ENSHCOP00000002151	ENSHCOP00000016047	Uncharacterized protein.	Proteasome subunit alpha type.	0.995
ENSHCOP00000002151	psma8	ENSHCOP00000002151	ENSHCOP00000028393	Uncharacterized protein.	Proteasome subunit alpha type.	0.993
ENSHCOP00000002151	psmb1	ENSHCOP00000002151	ENSHCOP00000010984	Uncharacterized protein.	Proteasome subunit beta.	0.995
ENSHCOP00000002151	psmb2	ENSHCOP00000002151	ENSHCOP00000002607	Uncharacterized protein.	Proteasome subunit beta.	0.994
ENSHCOP00000002151	psmb3	ENSHCOP00000002151	ENSHCOP00000018113	Uncharacterized protein.	Proteasome subunit beta.	0.995
ENSHCOP00000002151	psmb4	ENSHCOP00000002151	ENSHCOP00000027244	Uncharacterized protein.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.995
ENSHCOP00000002151	psmb5	ENSHCOP00000002151	ENSHCOP00000013676	Uncharacterized protein.	Proteasome subunit beta.	0.994