10 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RHOB	Ras homolog family member B. (200 aa)
	rock2	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1338 aa)
	LOC109507788	Uncharacterized protein. (193 aa)
	LOC109521178	Cofilin 2 (muscle); Belongs to the actin-binding proteins ADF family. (167 aa)
	LOC109531368	Uncharacterized protein. (193 aa)
	rock1	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1333 aa)
	LOC109511764	Uncharacterized protein. (262 aa)
	LOC109522387	Uncharacterized protein. (193 aa)
	LOC109516547	Cofilin 1; Belongs to the actin-binding proteins ADF family. (167 aa)
	LOC109528419	Ras homolog gene family, member Aa. (193 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109507788	rock1	ENSHCOP00000017424	ENSHCOP00000014302	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
LOC109507788	rock2	ENSHCOP00000017424	ENSHCOP00000022494	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
LOC109511764	rock1	ENSHCOP00000005171	ENSHCOP00000014302	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.971
LOC109511764	rock2	ENSHCOP00000005171	ENSHCOP00000022494	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
LOC109516547	LOC109521178	ENSHCOP00000002584	ENSHCOP00000017190	Cofilin 1; Belongs to the actin-binding proteins ADF family.	Cofilin 2 (muscle); Belongs to the actin-binding proteins ADF family.	0.901
LOC109521178	LOC109516547	ENSHCOP00000017190	ENSHCOP00000002584	Cofilin 2 (muscle); Belongs to the actin-binding proteins ADF family.	Cofilin 1; Belongs to the actin-binding proteins ADF family.	0.901
LOC109522387	rock1	ENSHCOP00000004882	ENSHCOP00000014302	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.971
LOC109522387	rock2	ENSHCOP00000004882	ENSHCOP00000022494	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
LOC109528419	rock1	ENSHCOP00000001291	ENSHCOP00000014302	Ras homolog gene family, member Aa.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.971
LOC109528419	rock2	ENSHCOP00000001291	ENSHCOP00000022494	Ras homolog gene family, member Aa.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
LOC109531368	rock1	ENSHCOP00000015776	ENSHCOP00000014302	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.971
LOC109531368	rock2	ENSHCOP00000015776	ENSHCOP00000022494	Uncharacterized protein.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
RHOB	rock1	ENSHCOP00000022445	ENSHCOP00000014302	Ras homolog family member B.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
RHOB	rock2	ENSHCOP00000022445	ENSHCOP00000022494	Ras homolog family member B.	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.727
rock1	LOC109507788	ENSHCOP00000014302	ENSHCOP00000017424	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Uncharacterized protein.	0.727
rock1	LOC109511764	ENSHCOP00000014302	ENSHCOP00000005171	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Uncharacterized protein.	0.971
rock1	LOC109522387	ENSHCOP00000014302	ENSHCOP00000004882	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Uncharacterized protein.	0.971
rock1	LOC109528419	ENSHCOP00000014302	ENSHCOP00000001291	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Ras homolog gene family, member Aa.	0.971
rock1	LOC109531368	ENSHCOP00000014302	ENSHCOP00000015776	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Uncharacterized protein.	0.971
rock1	RHOB	ENSHCOP00000014302	ENSHCOP00000022445	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Ras homolog family member B.	0.727