STRINGSTRING
sumo1 sumo1 pold3 pold3 ubc ubc ino80b ino80b parp2 parp2 LOC109517068 LOC109517068 cops7a cops7a chd1l chd1l LOC109528246 LOC109528246 pole2 pole2 polr2b polr2b LOC109516619 LOC109516619 YY1 YY1 rfc4 rfc4 bivm bivm LOC109520102 LOC109520102 xab2 xab2 gtf2h5 gtf2h5 rbx1 rbx1 cops3 cops3 gtf2h3 gtf2h3 LOC109522402 LOC109522402 polr2j polr2j LOC109506821 LOC109506821 Polk Polk cul4b cul4b ddb2 ddb2 ercc2 ercc2 ube2i ube2i LOC109526112 LOC109526112 polr2k polr2k ino80c ino80c ercc3 ercc3 ccnh ccnh ercc1 ercc1 ercc8 ercc8 ddb1 ddb1 wdr76 wdr76 ZNF830 ZNF830 ube2v2 ube2v2 rps27a rps27a rad23a rad23a LOC109528114 LOC109528114 ENSHCOP00000016557 ENSHCOP00000016557 xpa xpa tfpt tfpt POLR2E POLR2E ENSHCOP00000017279 ENSHCOP00000017279 rfc5 rfc5 cops2 cops2 ENSHCOP00000017898 ENSHCOP00000017898 ENSHCOP00000017906 ENSHCOP00000017906 cul4a cul4a Pole4 Pole4 LOC109532275 LOC109532275 ino80 ino80 usp7 usp7 actr8 actr8 actr5 actr5 ENSHCOP00000018695 ENSHCOP00000018695 RCBTB1 RCBTB1 LOC109529063 LOC109529063 ruvbl1 ruvbl1 LOC109522412 LOC109522412 ino80d ino80d ENSHCOP00000019923 ENSHCOP00000019923 rpap3 rpap3 ENSHCOP00000020068 ENSHCOP00000020068 uba52 uba52 pole pole sumo2 sumo2 aqr aqr rpa1 rpa1 pold4 pold4 cetn3 cetn3 tceanc2 tceanc2 meiob meiob cops8 cops8 rfc1 rfc1 mnat1 mnat1 cops4 cops4 LOC109524429 LOC109524429 rnf111 rnf111 Ercc5 Ercc5 ENSHCOP00000002291 ENSHCOP00000002291 ENSHCOP00000002941 ENSHCOP00000002941 pcna pcna LOC109522167 LOC109522167 LOC109507180 LOC109507180 xrcc1 xrcc1 ENSHCOP00000004339 ENSHCOP00000004339 pole3 pole3 LOC109527038 LOC109527038 polr2f polr2f polr2d polr2d rpa2 rpa2 xpc xpc Usp40 Usp40 SUMO3 SUMO3 ENSHCOP00000028059 ENSHCOP00000028059 gtf2h1 gtf2h1 ercc6 ercc6 nfrkb nfrkb mcrs1 mcrs1 tcea1 tcea1 gtf2h4 gtf2h4 LOC109511229 LOC109511229 ENSHCOP00000026411 ENSHCOP00000026411 gps1 gps1 prpf19 prpf19 pold2 pold2 cdk7 cdk7 ercc4 ercc4 pias1 pias1 rpa3 rpa3 usp45 usp45 pold1 pold1 LOC109514850 LOC109514850 phf3 phf3 ENSHCOP00000024076 ENSHCOP00000024076 lig1 lig1 ppie ppie ino80e ino80e LOC109522892 LOC109522892 polr2a polr2a rfc2 rfc2 parp1 parp1 LOC109511281 LOC109511281 kxd1 kxd1 ube2n ube2n LOC109518943 LOC109518943 nrde2 nrde2 LOC109520855 LOC109520855 rfc3 rfc3 polr2l polr2l LOC109520279 LOC109520279 polr2c polr2c LOC109520242 LOC109520242 COPS6 COPS6 cops5 cops5 ppp1r42 ppp1r42 LOC109525230 LOC109525230 LOC109514338 LOC109514338 polr2g polr2g ENSHCOP00000007515 ENSHCOP00000007515 ENSHCOP00000007641 ENSHCOP00000007641 ENSHCOP00000007719 ENSHCOP00000007719 ubb ubb LOC109512841 LOC109512841 lig3 lig3 LOC109519125 LOC109519125 LOC109526212 LOC109526212 polr2i polr2i
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sumo1Small ubiquitin-related modifier. (101 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (437 aa)
ubcUncharacterized protein. (989 aa)
ino80bINO80 complex subunit B. (338 aa)
parp2Poly [ADP-ribose] polymerase. (661 aa)
LOC109517068Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (572 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
chd1lChromodomain helicase DNA binding protein 1-like. (904 aa)
LOC109528246Transcription elongation factor A (SII), 2. (276 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (521 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
LOC109516619Si:ch73-290k24.6. (280 aa)
YY1YY1 transcription factor b. (377 aa)
rfc4Replication factor C (activator 1) 4. (331 aa)
bivmBasic, immunoglobulin-like variable motif containing. (472 aa)
LOC109520102UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (164 aa)
xab2XPA binding protein 2. (846 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (181 aa)
cops3COP9 signalosome subunit 3. (423 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (299 aa)
LOC109522402ISY1 splicing factor homolog. (340 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (172 aa)
LOC109506821General transcription factor IIH subunit. (376 aa)
PolkPolymerase (DNA directed) kappa. (396 aa)
cul4bCullin 4B; Belongs to the cullin family. (772 aa)
ddb2Damage-specific DNA binding protein 2. (489 aa)
ercc2Excision repair cross-complementation group 2. (591 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
LOC109526112YY1 transcription factor. (350 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
ino80cINO80 complex subunit C. (192 aa)
ercc3Excision repair cross-complementation group 3. (782 aa)
ccnhCyclin H; Belongs to the cyclin family. (320 aa)
ercc1Excision repair cross-complementation group 1. (338 aa)
ercc8Excision repair cross-complementation group 8. (384 aa)
ddb1Damage-specific DNA binding protein 1. (1093 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (487 aa)
ZNF830Zinc finger protein 830. (344 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (148 aa)
rps27aRibosomal protein S27a. (156 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (367 aa)
LOC109528114RAD23 homolog B, nucleotide excision repair protein. (380 aa)
ENSHCOP00000016557Uncharacterized protein. (466 aa)
xpaXeroderma pigmentosum, complementation group A. (279 aa)
tfptTCF3 (E2A) fusion partner. (198 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
ENSHCOP00000017279Von Willebrand factor A domain containing 5B2. (817 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
cops2COP9 signalosome subunit 2. (443 aa)
ENSHCOP00000017898Rad60-SLD domain-containing protein. (115 aa)
ENSHCOP00000017906Small ubiquitin-related modifier. (95 aa)
cul4aCullin 4A; Belongs to the cullin family. (749 aa)
Pole4CBFD_NFYB_HMF domain-containing protein. (128 aa)
LOC109532275SCY domain-containing protein. (126 aa)
ino80INO80 complex ATPase subunit. (1543 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1111 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (639 aa)
actr5Actin related protein 5; Belongs to the actin family. (595 aa)
ENSHCOP00000018695UV-stimulated scaffold protein A. (756 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
LOC109529063Centrin 4. (175 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (396 aa)
LOC109522412Poly [ADP-ribose] polymerase. (528 aa)
ino80dINO80 complex subunit Da. (979 aa)
ENSHCOP00000019923Si:cabz01080528.1. (630 aa)
rpap3RNA polymerase II associated protein 3. (618 aa)
ENSHCOP00000020068Transcription elongation factor A (SII), 3. (331 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
aqrAquarius intron-binding spliceosomal factor. (1395 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (611 aa)
pold4Si:dkey-28b4.7. (106 aa)
cetn3Centrin 3. (166 aa)
tceanc2TFIIS N-terminal domain-containing protein. (208 aa)
meiobMethionine sulfoxide reductase B1b. (439 aa)
cops8COP9 signalosome subunit 8. (191 aa)
rfc1Replication factor C subunit 1. (1130 aa)
mnat1MNAT1 component of CDK activating kinase. (289 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
LOC109524429High mobility group nucleosome binding domain 6. (90 aa)
rnf111Ring finger protein 111. (1022 aa)
Ercc5XPGI domain-containing protein. (373 aa)
ENSHCOP00000002291XPGN domain-containing protein. (242 aa)
ENSHCOP00000002941Uncharacterized protein. (63 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
LOC109522167Poly [ADP-ribose] polymerase. (524 aa)
LOC109507180Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (612 aa)
ENSHCOP00000004339TFIIS central domain-containing protein. (236 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)
LOC109527038ATPase family AAA domain containing 5a. (1619 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (142 aa)
rpa2Replication protein A2. (314 aa)
xpcXeroderma pigmentosum, complementation group C. (859 aa)
Usp40USP domain-containing protein; Belongs to the peptidase C19 family. (109 aa)
SUMO3Ubiquitin-like domain-containing protein. (151 aa)
ENSHCOP00000028059Uncharacterized protein. (127 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (544 aa)
ercc6Excision repair cross-complementation group 6. (1377 aa)
nfrkbNuclear factor related to kappaB binding protein. (1123 aa)
mcrs1Microspherule protein 1. (464 aa)
tcea1Transcription elongation factor A (SII), 1. (309 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (441 aa)
LOC109511229Small ubiquitin-related modifier. (96 aa)
ENSHCOP00000026411Uncharacterized protein. (408 aa)
gps1G protein pathway suppressor 1. (487 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
cdk7Cyclin-dependent kinase 7. (298 aa)
ercc4Excision repair cross-complementation group 4. (900 aa)
pias1Protein inhibitor of activated STAT, 1b. (658 aa)
rpa3Replication protein A3. (127 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (798 aa)
pold1DNA polymerase. (1105 aa)
LOC109514850E1A binding protein p300 b. (2669 aa)
phf3PHD finger protein 3. (1490 aa)
ENSHCOP00000024076Si:ch73-1a9.3. (58 aa)
lig1DNA ligase. (902 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
ino80eINO80 complex subunit E. (236 aa)
LOC109522892RNA_pol_Rpb5_N domain-containing protein. (127 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
rfc2Replication factor C (activator 1) 2. (244 aa)
parp1Poly [ADP-ribose] polymerase. (1020 aa)
LOC109511281Uncharacterized protein. (375 aa)
kxd1KxDL motif containing 1. (185 aa)
ube2nUbiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
LOC109518943DNA-directed RNA polymerases I, II, and III subunit RPABC3. (150 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1031 aa)
LOC109520855Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (527 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
LOC109520279UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
LOC109520242Uncharacterized protein. (387 aa)
COPS6COP9 signalosome subunit 6. (323 aa)
cops5COP9 signalosome subunit 5. (333 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (330 aa)
LOC109525230RAD23 homolog A, nucleotide excision repair protein b. (443 aa)
LOC109514338Protein inhibitor of activated STAT, 1a. (706 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (189 aa)
ENSHCOP00000007515Uncharacterized protein. (89 aa)
ENSHCOP00000007641Uncharacterized protein. (208 aa)
ENSHCOP00000007719Ubiquitin-like domain-containing protein. (106 aa)
ubbUbiquitin B. (281 aa)
LOC109512841E1A binding protein p300 a. (2561 aa)
lig3DNA ligase. (993 aa)
LOC109519125DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
LOC109526212Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (532 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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