STRINGSTRING
ccnh ccnh ercc3 ercc3 polr2k polr2k ercc2 ercc2 cul4b cul4b ercc6 ercc6 tcea1 tcea1 gtf2h4 gtf2h4 ENSHCOP00000026411 ENSHCOP00000026411 prpf19 prpf19 pold2 pold2 Polk Polk cdk7 cdk7 ercc4 ercc4 rpa3 rpa3 pold1 pold1 LOC109514850 LOC109514850 phf3 phf3 ENSHCOP00000024076 ENSHCOP00000024076 ppie ppie LOC109522892 LOC109522892 polr2a polr2a LOC109506821 LOC109506821 polr2j polr2j rpa2 rpa2 polr2d polr2d polr2f polr2f LOC109527038 LOC109527038 pole3 pole3 ENSHCOP00000004339 ENSHCOP00000004339 LOC109507180 LOC109507180 pcna pcna ENSHCOP00000002291 ENSHCOP00000002291 Ercc5 Ercc5 LOC109524429 LOC109524429 mnat1 mnat1 rfc1 rfc1 meiob meiob tceanc2 tceanc2 pold4 pold4 rpa1 rpa1 LOC109522402 LOC109522402 rfc2 rfc2 gtf2h3 gtf2h3 rbx1 rbx1 pole pole polr2l polr2l rfc3 rfc3 LOC109520855 LOC109520855 nrde2 nrde2 LOC109518943 LOC109518943 kxd1 kxd1 gtf2h5 gtf2h5 xab2 xab2 aqr aqr uba52 uba52 ENSHCOP00000020068 ENSHCOP00000020068 RCBTB1 RCBTB1 ENSHCOP00000018695 ENSHCOP00000018695 usp7 usp7 LOC109532275 LOC109532275 Pole4 Pole4 cul4a cul4a rfc5 rfc5 POLR2E POLR2E xpa xpa rps27a rps27a ZNF830 ZNF830 ddb1 ddb1 ercc8 ercc8 bivm bivm rfc4 rfc4 polr2b polr2b pole2 pole2 LOC109528246 LOC109528246 LOC109517068 LOC109517068 ubc ubc pold3 pold3 polr2i polr2i LOC109526212 LOC109526212 LOC109519125 LOC109519125 LOC109512841 LOC109512841 ubb ubb ENSHCOP00000007719 ENSHCOP00000007719 ENSHCOP00000007641 ENSHCOP00000007641 ENSHCOP00000007515 ENSHCOP00000007515 polr2g polr2g polr2c polr2c Usp40 Usp40 ENSHCOP00000028059 ENSHCOP00000028059 gtf2h1 gtf2h1 ercc1 ercc1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ccnhCyclin H; Belongs to the cyclin family. (320 aa)
ercc3Excision repair cross-complementation group 3. (782 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
ercc2Excision repair cross-complementation group 2. (591 aa)
cul4bCullin 4B; Belongs to the cullin family. (772 aa)
ercc6Excision repair cross-complementation group 6. (1377 aa)
tcea1Transcription elongation factor A (SII), 1. (309 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (441 aa)
ENSHCOP00000026411Uncharacterized protein. (408 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
PolkPolymerase (DNA directed) kappa. (396 aa)
cdk7Cyclin-dependent kinase 7. (298 aa)
ercc4Excision repair cross-complementation group 4. (900 aa)
rpa3Replication protein A3. (127 aa)
pold1DNA polymerase. (1105 aa)
LOC109514850E1A binding protein p300 b. (2669 aa)
phf3PHD finger protein 3. (1490 aa)
ENSHCOP00000024076Si:ch73-1a9.3. (58 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (301 aa)
LOC109522892RNA_pol_Rpb5_N domain-containing protein. (127 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
LOC109506821General transcription factor IIH subunit. (376 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (172 aa)
rpa2Replication protein A2. (314 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (142 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC109527038ATPase family AAA domain containing 5a. (1619 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)
ENSHCOP00000004339TFIIS central domain-containing protein. (236 aa)
LOC109507180Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
ENSHCOP00000002291XPGN domain-containing protein. (242 aa)
Ercc5XPGI domain-containing protein. (373 aa)
LOC109524429High mobility group nucleosome binding domain 6. (90 aa)
mnat1MNAT1 component of CDK activating kinase. (289 aa)
rfc1Replication factor C subunit 1. (1130 aa)
meiobMethionine sulfoxide reductase B1b. (439 aa)
tceanc2TFIIS N-terminal domain-containing protein. (208 aa)
pold4Si:dkey-28b4.7. (106 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (611 aa)
LOC109522402ISY1 splicing factor homolog. (340 aa)
rfc2Replication factor C (activator 1) 2. (244 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (299 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (181 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2282 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
LOC109520855Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (527 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1031 aa)
LOC109518943DNA-directed RNA polymerases I, II, and III subunit RPABC3. (150 aa)
kxd1KxDL motif containing 1. (185 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
xab2XPA binding protein 2. (846 aa)
aqrAquarius intron-binding spliceosomal factor. (1395 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
ENSHCOP00000020068Transcription elongation factor A (SII), 3. (331 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
ENSHCOP00000018695UV-stimulated scaffold protein A. (756 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1111 aa)
LOC109532275SCY domain-containing protein. (126 aa)
Pole4CBFD_NFYB_HMF domain-containing protein. (128 aa)
cul4aCullin 4A; Belongs to the cullin family. (749 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
xpaXeroderma pigmentosum, complementation group A. (279 aa)
rps27aRibosomal protein S27a. (156 aa)
ZNF830Zinc finger protein 830. (344 aa)
ddb1Damage-specific DNA binding protein 1. (1093 aa)
ercc8Excision repair cross-complementation group 8. (384 aa)
bivmBasic, immunoglobulin-like variable motif containing. (472 aa)
rfc4Replication factor C (activator 1) 4. (331 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (521 aa)
LOC109528246Transcription elongation factor A (SII), 2. (276 aa)
LOC109517068Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (572 aa)
ubcUncharacterized protein. (989 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (437 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC109526212Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (532 aa)
LOC109519125DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
LOC109512841E1A binding protein p300 a. (2561 aa)
ubbUbiquitin B. (281 aa)
ENSHCOP00000007719Ubiquitin-like domain-containing protein. (106 aa)
ENSHCOP00000007641Uncharacterized protein. (208 aa)
ENSHCOP00000007515Uncharacterized protein. (89 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (189 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
Usp40USP domain-containing protein; Belongs to the peptidase C19 family. (109 aa)
ENSHCOP00000028059Uncharacterized protein. (127 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (544 aa)
ercc1Excision repair cross-complementation group 1. (338 aa)
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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