20 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (437 aa)
	pola2	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (600 aa)
	ENSHCOP00000026411	Uncharacterized protein. (408 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
	pold1	DNA polymerase. (1105 aa)
	prim2	DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (519 aa)
	Pola1	DNA polymerase. (1356 aa)
	rfc2	Replication factor C (activator 1) 2. (244 aa)
	LOC109520855	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (527 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	pold4	Si:dkey-28b4.7. (106 aa)
	rfc1	Replication factor C subunit 1. (1130 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	LOC109527038	ATPase family AAA domain containing 5a. (1619 aa)
	ENSHCOP00000007515	Uncharacterized protein. (89 aa)
	LOC109526212	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (532 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (531 aa)
	rfc5	Replication factor C (activator 1) 5. (335 aa)
	prim1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (429 aa)
	rfc4	Replication factor C (activator 1) 4. (331 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000007515	ENSHCOP00000026411	ENSHCOP00000007515	ENSHCOP00000026411	Uncharacterized protein.	Uncharacterized protein.	0.926
ENSHCOP00000007515	LOC109527038	ENSHCOP00000007515	ENSHCOP00000004580	Uncharacterized protein.	ATPase family AAA domain containing 5a.	0.926
ENSHCOP00000007515	Pola1	ENSHCOP00000007515	ENSHCOP00000023742	Uncharacterized protein.	DNA polymerase.	0.814
ENSHCOP00000007515	pcna	ENSHCOP00000007515	ENSHCOP00000003160	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.992
ENSHCOP00000007515	pola2	ENSHCOP00000007515	ENSHCOP00000021861	Uncharacterized protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.875
ENSHCOP00000007515	pold1	ENSHCOP00000007515	ENSHCOP00000024706	Uncharacterized protein.	DNA polymerase.	0.883
ENSHCOP00000007515	pold2	ENSHCOP00000007515	ENSHCOP00000025934	Uncharacterized protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.858
ENSHCOP00000007515	pold3	ENSHCOP00000007515	ENSHCOP00000009331	Uncharacterized protein.	Polymerase (DNA-directed), delta 3, accessory subunit.	0.598
ENSHCOP00000007515	prim1	ENSHCOP00000007515	ENSHCOP00000015573	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.945
ENSHCOP00000007515	prim2	ENSHCOP00000007515	ENSHCOP00000024507	Uncharacterized protein.	DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands.	0.907
ENSHCOP00000007515	rfc1	ENSHCOP00000007515	ENSHCOP00000001479	Uncharacterized protein.	Replication factor C subunit 1.	0.977
ENSHCOP00000007515	rfc2	ENSHCOP00000007515	ENSHCOP00000023251	Uncharacterized protein.	Replication factor C (activator 1) 2.	0.984
ENSHCOP00000007515	rfc3	ENSHCOP00000007515	ENSHCOP00000021883	Uncharacterized protein.	Replication factor C (activator 1) 3.	0.995
ENSHCOP00000007515	rfc5	ENSHCOP00000007515	ENSHCOP00000017308	Uncharacterized protein.	Replication factor C (activator 1) 5.	0.992
ENSHCOP00000026411	ENSHCOP00000007515	ENSHCOP00000026411	ENSHCOP00000007515	Uncharacterized protein.	Uncharacterized protein.	0.926
ENSHCOP00000026411	Pola1	ENSHCOP00000026411	ENSHCOP00000023742	Uncharacterized protein.	DNA polymerase.	0.841
ENSHCOP00000026411	pcna	ENSHCOP00000026411	ENSHCOP00000003160	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.962
ENSHCOP00000026411	pola2	ENSHCOP00000026411	ENSHCOP00000021861	Uncharacterized protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.837
ENSHCOP00000026411	pold1	ENSHCOP00000026411	ENSHCOP00000024706	Uncharacterized protein.	DNA polymerase.	0.787
ENSHCOP00000026411	pold2	ENSHCOP00000026411	ENSHCOP00000025934	Uncharacterized protein.	Polymerase (DNA directed), delta 2, regulatory subunit.	0.665