20 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	maml3	Mastermind-like transcriptional coactivator 3. (1156 aa)
	snw1	SNW domain containing 1. (536 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	hes1	Hairy-related 6. (274 aa)
	maml1	Mastermind-like transcriptional coactivator 1. (992 aa)
	LOC109532526	Uncharacterized protein. (1579 aa)
	Runx3	Runt domain-containing protein. (104 aa)
	ENSHCOP00000006772	Uncharacterized protein. (615 aa)
	maml2	Uncharacterized protein. (705 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	runx3	Runt-related transcription factor. (382 aa)
	LOC109531601	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (793 aa)
	kat2a	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (798 aa)
	rbpj	Recombination signal binding protein for immunoglobulin kappa J region. (489 aa)
	notch1	Notch receptor 1b. (2444 aa)
	LOC109527342	CREB binding protein a. (2447 aa)
	LOC109520433	Notch receptor 1a. (2399 aa)
	hes4	Hairy-related 9. (288 aa)
	LOC109532549	CREB binding protein b. (1735 aa)
	ENSHCOP00000021727	annotation not available (84 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000006772	ENSHCOP00000021727	ENSHCOP00000006772	ENSHCOP00000021727	Uncharacterized protein.	annotation not available	0.632
ENSHCOP00000006772	LOC109512841	ENSHCOP00000006772	ENSHCOP00000007909	Uncharacterized protein.	E1A binding protein p300 a.	0.854
ENSHCOP00000006772	LOC109514850	ENSHCOP00000006772	ENSHCOP00000024673	Uncharacterized protein.	E1A binding protein p300 b.	0.854
ENSHCOP00000006772	LOC109520433	ENSHCOP00000006772	ENSHCOP00000018474	Uncharacterized protein.	Notch receptor 1a.	0.500
ENSHCOP00000006772	LOC109531601	ENSHCOP00000006772	ENSHCOP00000010460	Uncharacterized protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.632
ENSHCOP00000006772	LOC109532549	ENSHCOP00000006772	ENSHCOP00000021630	Uncharacterized protein.	CREB binding protein b.	0.925
ENSHCOP00000006772	Runx3	ENSHCOP00000006772	ENSHCOP00000007813	Uncharacterized protein.	Runt domain-containing protein.	0.472
ENSHCOP00000006772	kat2a	ENSHCOP00000006772	ENSHCOP00000003349	Uncharacterized protein.	Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.	0.632
ENSHCOP00000006772	maml1	ENSHCOP00000006772	ENSHCOP00000002270	Uncharacterized protein.	Mastermind-like transcriptional coactivator 1.	0.647
ENSHCOP00000006772	maml2	ENSHCOP00000006772	ENSHCOP00000022973	Uncharacterized protein.	Uncharacterized protein.	0.537
ENSHCOP00000006772	notch1	ENSHCOP00000006772	ENSHCOP00000016426	Uncharacterized protein.	Notch receptor 1b.	0.500
ENSHCOP00000006772	rbpj	ENSHCOP00000006772	ENSHCOP00000007845	Uncharacterized protein.	Recombination signal binding protein for immunoglobulin kappa J region.	0.607
ENSHCOP00000006772	runx3	ENSHCOP00000006772	ENSHCOP00000010291	Uncharacterized protein.	Runt-related transcription factor.	0.472
ENSHCOP00000006772	snw1	ENSHCOP00000006772	ENSHCOP00000022906	Uncharacterized protein.	SNW domain containing 1.	0.571
ENSHCOP00000021727	ENSHCOP00000006772	ENSHCOP00000021727	ENSHCOP00000006772	annotation not available	Uncharacterized protein.	0.632
ENSHCOP00000021727	LOC109512841	ENSHCOP00000021727	ENSHCOP00000007909	annotation not available	E1A binding protein p300 a.	0.760
ENSHCOP00000021727	LOC109514850	ENSHCOP00000021727	ENSHCOP00000024673	annotation not available	E1A binding protein p300 b.	0.760
ENSHCOP00000021727	LOC109520433	ENSHCOP00000021727	ENSHCOP00000018474	annotation not available	Notch receptor 1a.	0.444
ENSHCOP00000021727	LOC109527342	ENSHCOP00000021727	ENSHCOP00000017333	annotation not available	CREB binding protein a.	0.632
ENSHCOP00000021727	LOC109532526	ENSHCOP00000021727	ENSHCOP00000006363	annotation not available	Uncharacterized protein.	0.632