19 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109520496	Transducin (beta)-like 1 X-linked receptor 1b. (516 aa)
	ENSHCOP00000004894	ADP-ribosylation factor-like 4aa. (193 aa)
	HDAC3	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. (428 aa)
	LOC109531218	Transducin beta like 1 X-linked. (513 aa)
	RXRB	Retinoid X receptor beta. (470 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	ncor1	Nuclear receptor corepressor 1. (2383 aa)
	ARL4C	ADP ribosylation factor like GTPase 4C. (201 aa)
	abca1	ATP-binding cassette, sub-family A (ABC1), member 1A. (2226 aa)
	nr1h3	Nuclear receptor subfamily 1, group H, member 3. (462 aa)
	ENSHCOP00000013946	ATP-binding cassette, sub-family A (ABC1), member 1B. (153 aa)
	ENSHCOP00000012141	Uncharacterized protein. (1595 aa)
	LOC109507712	ADP-ribosylation factor-like 4ab. (200 aa)
	ncor2	Nuclear receptor corepressor 2. (2225 aa)
	ncoa1	Nuclear receptor coactivator 1. (1506 aa)
	LOC109530282	Retinoid X receptor, alpha a. (444 aa)
	LOC109517612	Uncharacterized protein. (421 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	gps2	G protein pathway suppressor 2. (339 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000012141	ENSHCOP00000013946	ENSHCOP00000012141	ENSHCOP00000013946	Uncharacterized protein.	ATP-binding cassette, sub-family A (ABC1), member 1B.	0.899
ENSHCOP00000012141	nr1h3	ENSHCOP00000012141	ENSHCOP00000015233	Uncharacterized protein.	Nuclear receptor subfamily 1, group H, member 3.	0.627
ENSHCOP00000013946	ENSHCOP00000012141	ENSHCOP00000013946	ENSHCOP00000012141	ATP-binding cassette, sub-family A (ABC1), member 1B.	Uncharacterized protein.	0.899
ENSHCOP00000013946	abca1	ENSHCOP00000013946	ENSHCOP00000016416	ATP-binding cassette, sub-family A (ABC1), member 1B.	ATP-binding cassette, sub-family A (ABC1), member 1A.	0.900
ENSHCOP00000013946	nr1h3	ENSHCOP00000013946	ENSHCOP00000015233	ATP-binding cassette, sub-family A (ABC1), member 1B.	Nuclear receptor subfamily 1, group H, member 3.	0.627
HDAC3	LOC109512841	ENSHCOP00000003302	ENSHCOP00000007909	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	E1A binding protein p300 a.	0.658
HDAC3	LOC109514850	ENSHCOP00000003302	ENSHCOP00000024673	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	E1A binding protein p300 b.	0.658
HDAC3	LOC109517612	ENSHCOP00000003302	ENSHCOP00000009982	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Uncharacterized protein.	0.493
HDAC3	LOC109520496	ENSHCOP00000003302	ENSHCOP00000028231	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Transducin (beta)-like 1 X-linked receptor 1b.	0.865
HDAC3	LOC109530282	ENSHCOP00000003302	ENSHCOP00000010626	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Retinoid X receptor, alpha a.	0.493
HDAC3	LOC109531218	ENSHCOP00000003302	ENSHCOP00000003000	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Transducin beta like 1 X-linked.	0.865
HDAC3	RXRB	ENSHCOP00000003302	ENSHCOP00000027884	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Retinoid X receptor beta.	0.493
HDAC3	gps2	ENSHCOP00000003302	ENSHCOP00000006978	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	G protein pathway suppressor 2.	0.943
HDAC3	ncor1	ENSHCOP00000003302	ENSHCOP00000022282	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Nuclear receptor corepressor 1.	0.962
HDAC3	ncor2	ENSHCOP00000003302	ENSHCOP00000010931	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Nuclear receptor corepressor 2.	0.962
HDAC3	nr1h3	ENSHCOP00000003302	ENSHCOP00000015233	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Nuclear receptor subfamily 1, group H, member 3.	0.556
LOC109512841	HDAC3	ENSHCOP00000007909	ENSHCOP00000003302	E1A binding protein p300 a.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.658
LOC109512841	LOC109517612	ENSHCOP00000007909	ENSHCOP00000009982	E1A binding protein p300 a.	Uncharacterized protein.	0.497
LOC109512841	LOC109530282	ENSHCOP00000007909	ENSHCOP00000010626	E1A binding protein p300 a.	Retinoid X receptor, alpha a.	0.497
LOC109512841	RXRB	ENSHCOP00000007909	ENSHCOP00000027884	E1A binding protein p300 a.	Retinoid X receptor beta.	0.497