7 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nr1h3	Nuclear receptor subfamily 1, group H, member 3. (462 aa)
	LOC109530282	Retinoid X receptor, alpha a. (444 aa)
	LOC109517612	Uncharacterized protein. (421 aa)
	ncor2	Nuclear receptor corepressor 2. (2225 aa)
	ncoa1	Nuclear receptor coactivator 1. (1506 aa)
	ncor1	Nuclear receptor corepressor 1. (2383 aa)
	RXRB	Retinoid X receptor beta. (470 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109517612	ncoa1	ENSHCOP00000009982	ENSHCOP00000010836	Uncharacterized protein.	Nuclear receptor coactivator 1.	0.682
LOC109517612	ncor1	ENSHCOP00000009982	ENSHCOP00000022282	Uncharacterized protein.	Nuclear receptor corepressor 1.	0.797
LOC109517612	ncor2	ENSHCOP00000009982	ENSHCOP00000010931	Uncharacterized protein.	Nuclear receptor corepressor 2.	0.797
LOC109517612	nr1h3	ENSHCOP00000009982	ENSHCOP00000015233	Uncharacterized protein.	Nuclear receptor subfamily 1, group H, member 3.	0.928
LOC109530282	ncoa1	ENSHCOP00000010626	ENSHCOP00000010836	Retinoid X receptor, alpha a.	Nuclear receptor coactivator 1.	0.728
LOC109530282	ncor1	ENSHCOP00000010626	ENSHCOP00000022282	Retinoid X receptor, alpha a.	Nuclear receptor corepressor 1.	0.797
LOC109530282	ncor2	ENSHCOP00000010626	ENSHCOP00000010931	Retinoid X receptor, alpha a.	Nuclear receptor corepressor 2.	0.797
LOC109530282	nr1h3	ENSHCOP00000010626	ENSHCOP00000015233	Retinoid X receptor, alpha a.	Nuclear receptor subfamily 1, group H, member 3.	0.940
RXRB	ncoa1	ENSHCOP00000027884	ENSHCOP00000010836	Retinoid X receptor beta.	Nuclear receptor coactivator 1.	0.682
RXRB	ncor1	ENSHCOP00000027884	ENSHCOP00000022282	Retinoid X receptor beta.	Nuclear receptor corepressor 1.	0.797
RXRB	ncor2	ENSHCOP00000027884	ENSHCOP00000010931	Retinoid X receptor beta.	Nuclear receptor corepressor 2.	0.797
RXRB	nr1h3	ENSHCOP00000027884	ENSHCOP00000015233	Retinoid X receptor beta.	Nuclear receptor subfamily 1, group H, member 3.	0.928
ncoa1	LOC109517612	ENSHCOP00000010836	ENSHCOP00000009982	Nuclear receptor coactivator 1.	Uncharacterized protein.	0.682
ncoa1	LOC109530282	ENSHCOP00000010836	ENSHCOP00000010626	Nuclear receptor coactivator 1.	Retinoid X receptor, alpha a.	0.728
ncoa1	RXRB	ENSHCOP00000010836	ENSHCOP00000027884	Nuclear receptor coactivator 1.	Retinoid X receptor beta.	0.682
ncoa1	ncor1	ENSHCOP00000010836	ENSHCOP00000022282	Nuclear receptor coactivator 1.	Nuclear receptor corepressor 1.	0.494
ncoa1	ncor2	ENSHCOP00000010836	ENSHCOP00000010931	Nuclear receptor coactivator 1.	Nuclear receptor corepressor 2.	0.467
ncoa1	nr1h3	ENSHCOP00000010836	ENSHCOP00000015233	Nuclear receptor coactivator 1.	Nuclear receptor subfamily 1, group H, member 3.	0.781
ncor1	LOC109517612	ENSHCOP00000022282	ENSHCOP00000009982	Nuclear receptor corepressor 1.	Uncharacterized protein.	0.797
ncor1	LOC109530282	ENSHCOP00000022282	ENSHCOP00000010626	Nuclear receptor corepressor 1.	Retinoid X receptor, alpha a.	0.797