(18 nodes) Proteasome subunit network (Hippocampus comes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psma2	Proteasome subunit alpha type. (234 aa)
	psmb9	Proteasome subunit beta. (211 aa)
	ENSHCOP00000002151	Uncharacterized protein. (84 aa)
	psma4	Proteasome subunit alpha type. (261 aa)
	psmb7	Proteasome subunit beta. (277 aa)
	psmb2	Proteasome subunit beta. (202 aa)
	psma5	Proteasome subunit alpha type. (233 aa)
	ENSHCOP00000023550	Proteasome subunit beta. (281 aa)
	psma3	Proteasome subunit alpha type. (255 aa)
	psmb3	Proteasome subunit beta. (205 aa)
	psma6	Proteasome subunit alpha type. (246 aa)
	psmb6	Proteasome subunit beta. (233 aa)
	ENSHCOP00000004228	Uncharacterized protein. (76 aa)
	psma8	Proteasome subunit alpha type. (251 aa)
	psmb4	Proteasome subunit beta; Belongs to the peptidase T1B family. (259 aa)
	psma1	Proteasome subunit alpha type. (264 aa)
	psmb5	Proteasome subunit beta. (272 aa)
	psmb1	Proteasome subunit beta. (237 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000002151	ENSHCOP00000004228	ENSHCOP00000002151	ENSHCOP00000004228	Uncharacterized protein.	Uncharacterized protein.	0.980
ENSHCOP00000002151	ENSHCOP00000023550	ENSHCOP00000002151	ENSHCOP00000023550	Uncharacterized protein.	Proteasome subunit beta.	0.981
ENSHCOP00000002151	psma1	ENSHCOP00000002151	ENSHCOP00000013921	Uncharacterized protein.	Proteasome subunit alpha type.	0.995
ENSHCOP00000002151	psma2	ENSHCOP00000002151	ENSHCOP00000007766	Uncharacterized protein.	Proteasome subunit alpha type.	0.991
ENSHCOP00000002151	psma3	ENSHCOP00000002151	ENSHCOP00000000069	Uncharacterized protein.	Proteasome subunit alpha type.	0.992
ENSHCOP00000002151	psma4	ENSHCOP00000002151	ENSHCOP00000027003	Uncharacterized protein.	Proteasome subunit alpha type.	0.990
ENSHCOP00000002151	psma5	ENSHCOP00000002151	ENSHCOP00000007221	Uncharacterized protein.	Proteasome subunit alpha type.	0.995
ENSHCOP00000002151	psma6	ENSHCOP00000002151	ENSHCOP00000016047	Uncharacterized protein.	Proteasome subunit alpha type.	0.995
ENSHCOP00000002151	psma8	ENSHCOP00000002151	ENSHCOP00000028393	Uncharacterized protein.	Proteasome subunit alpha type.	0.993
ENSHCOP00000002151	psmb1	ENSHCOP00000002151	ENSHCOP00000010984	Uncharacterized protein.	Proteasome subunit beta.	0.995
ENSHCOP00000002151	psmb2	ENSHCOP00000002151	ENSHCOP00000002607	Uncharacterized protein.	Proteasome subunit beta.	0.994
ENSHCOP00000002151	psmb3	ENSHCOP00000002151	ENSHCOP00000018113	Uncharacterized protein.	Proteasome subunit beta.	0.995
ENSHCOP00000002151	psmb4	ENSHCOP00000002151	ENSHCOP00000027244	Uncharacterized protein.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.995
ENSHCOP00000002151	psmb5	ENSHCOP00000002151	ENSHCOP00000013676	Uncharacterized protein.	Proteasome subunit beta.	0.994
ENSHCOP00000002151	psmb6	ENSHCOP00000002151	ENSHCOP00000006461	Uncharacterized protein.	Proteasome subunit beta.	0.989
ENSHCOP00000002151	psmb9	ENSHCOP00000002151	ENSHCOP00000000834	Uncharacterized protein.	Proteasome subunit beta.	0.987
ENSHCOP00000004228	ENSHCOP00000002151	ENSHCOP00000004228	ENSHCOP00000002151	Uncharacterized protein.	Uncharacterized protein.	0.980
ENSHCOP00000004228	ENSHCOP00000023550	ENSHCOP00000004228	ENSHCOP00000023550	Uncharacterized protein.	Proteasome subunit beta.	0.975
ENSHCOP00000004228	psma1	ENSHCOP00000004228	ENSHCOP00000013921	Uncharacterized protein.	Proteasome subunit alpha type.	0.995
ENSHCOP00000004228	psma2	ENSHCOP00000004228	ENSHCOP00000007766	Uncharacterized protein.	Proteasome subunit alpha type.	0.996