5 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	LOC109527342	CREB binding protein a. (2447 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	LOC109532526	Uncharacterized protein. (1579 aa)
	ENSHCOP00000006772	Uncharacterized protein. (615 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000006772	LOC109512841	ENSHCOP00000006772	ENSHCOP00000007909	Uncharacterized protein.	E1A binding protein p300 a.	0.854
ENSHCOP00000006772	LOC109514850	ENSHCOP00000006772	ENSHCOP00000024673	Uncharacterized protein.	E1A binding protein p300 b.	0.854
LOC109512841	ENSHCOP00000006772	ENSHCOP00000007909	ENSHCOP00000006772	E1A binding protein p300 a.	Uncharacterized protein.	0.854
LOC109512841	LOC109527342	ENSHCOP00000007909	ENSHCOP00000017333	E1A binding protein p300 a.	CREB binding protein a.	0.853
LOC109512841	LOC109532526	ENSHCOP00000007909	ENSHCOP00000006363	E1A binding protein p300 a.	Uncharacterized protein.	0.853
LOC109514850	ENSHCOP00000006772	ENSHCOP00000024673	ENSHCOP00000006772	E1A binding protein p300 b.	Uncharacterized protein.	0.854
LOC109514850	LOC109527342	ENSHCOP00000024673	ENSHCOP00000017333	E1A binding protein p300 b.	CREB binding protein a.	0.853
LOC109514850	LOC109532526	ENSHCOP00000024673	ENSHCOP00000006363	E1A binding protein p300 b.	Uncharacterized protein.	0.852
LOC109527342	LOC109512841	ENSHCOP00000017333	ENSHCOP00000007909	CREB binding protein a.	E1A binding protein p300 a.	0.853
LOC109527342	LOC109514850	ENSHCOP00000017333	ENSHCOP00000024673	CREB binding protein a.	E1A binding protein p300 b.	0.853
LOC109532526	LOC109512841	ENSHCOP00000006363	ENSHCOP00000007909	Uncharacterized protein.	E1A binding protein p300 a.	0.853
LOC109532526	LOC109514850	ENSHCOP00000006363	ENSHCOP00000024673	Uncharacterized protein.	E1A binding protein p300 b.	0.852