21 items (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109532549	CREB binding protein b. (1735 aa)
	KCMF1	Potassium channel modulatory factor 1. (418 aa)
	LOC109527342	CREB binding protein a. (2447 aa)
	ENSHCOP00000016627	Uncharacterized protein. (932 aa)
	dtna	Dystrobrevin. (728 aa)
	mib2	Mindbomb E3 ubiquitin protein ligase 2. (1039 aa)
	mib1	Mindbomb E3 ubiquitin protein ligase 1. (995 aa)
	sqstm1	Sequestosome 1. (407 aa)
	LOC109528145	Dystrobrevin. (560 aa)
	Herc2	HECT and RLD domain containing E3 ubiquitin protein ligase 2. (4726 aa)
	zzef1	Zinc finger, ZZ-type with EF hand domain 1. (2986 aa)
	drp2	Dystrophin related protein 2. (940 aa)
	zzz3	Zinc finger, ZZ-type containing 3. (944 aa)
	kcmf1	Potassium channel modulatory factor 1. (398 aa)
	LOC109512841	E1A binding protein p300 a. (2561 aa)
	LOC109528318	Dystrobrevin. (619 aa)
	nbr1	NBR1 autophagy cargo receptor b. (921 aa)
	LOC109532526	Uncharacterized protein. (1579 aa)
	tada2b	Transcriptional adapter. (499 aa)
	LOC109514850	E1A binding protein p300 b. (2669 aa)
	ENSHCOP00000023855	Uncharacterized protein; May play a role in anchoring the cytoskeleton to the plasma membrane. (3424 aa)

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000016627	LOC109528145	ENSHCOP00000016627	ENSHCOP00000010350	Uncharacterized protein.	Dystrobrevin.	0.471
ENSHCOP00000016627	LOC109528318	ENSHCOP00000016627	ENSHCOP00000008459	Uncharacterized protein.	Dystrobrevin.	0.468
ENSHCOP00000016627	dtna	ENSHCOP00000016627	ENSHCOP00000015630	Uncharacterized protein.	Dystrobrevin.	0.480
ENSHCOP00000023855	LOC109528145	ENSHCOP00000023855	ENSHCOP00000010350	Uncharacterized protein; May play a role in anchoring the cytoskeleton to the plasma membrane.	Dystrobrevin.	0.471
ENSHCOP00000023855	LOC109528318	ENSHCOP00000023855	ENSHCOP00000008459	Uncharacterized protein; May play a role in anchoring the cytoskeleton to the plasma membrane.	Dystrobrevin.	0.468
ENSHCOP00000023855	dtna	ENSHCOP00000023855	ENSHCOP00000015630	Uncharacterized protein; May play a role in anchoring the cytoskeleton to the plasma membrane.	Dystrobrevin.	0.480
LOC109512841	LOC109527342	ENSHCOP00000007909	ENSHCOP00000017333	E1A binding protein p300 a.	CREB binding protein a.	0.853
LOC109512841	LOC109532526	ENSHCOP00000007909	ENSHCOP00000006363	E1A binding protein p300 a.	Uncharacterized protein.	0.853
LOC109512841	LOC109532549	ENSHCOP00000007909	ENSHCOP00000021630	E1A binding protein p300 a.	CREB binding protein b.	0.852
LOC109514850	LOC109527342	ENSHCOP00000024673	ENSHCOP00000017333	E1A binding protein p300 b.	CREB binding protein a.	0.853
LOC109514850	LOC109532526	ENSHCOP00000024673	ENSHCOP00000006363	E1A binding protein p300 b.	Uncharacterized protein.	0.852
LOC109514850	LOC109532549	ENSHCOP00000024673	ENSHCOP00000021630	E1A binding protein p300 b.	CREB binding protein b.	0.853
LOC109527342	LOC109512841	ENSHCOP00000017333	ENSHCOP00000007909	CREB binding protein a.	E1A binding protein p300 a.	0.853
LOC109527342	LOC109514850	ENSHCOP00000017333	ENSHCOP00000024673	CREB binding protein a.	E1A binding protein p300 b.	0.853
LOC109527342	LOC109532549	ENSHCOP00000017333	ENSHCOP00000021630	CREB binding protein a.	CREB binding protein b.	0.901
LOC109528145	ENSHCOP00000016627	ENSHCOP00000010350	ENSHCOP00000016627	Dystrobrevin.	Uncharacterized protein.	0.471
LOC109528145	ENSHCOP00000023855	ENSHCOP00000010350	ENSHCOP00000023855	Dystrobrevin.	Uncharacterized protein; May play a role in anchoring the cytoskeleton to the plasma membrane.	0.471
LOC109528145	drp2	ENSHCOP00000010350	ENSHCOP00000000178	Dystrobrevin.	Dystrophin related protein 2.	0.471
LOC109528318	ENSHCOP00000016627	ENSHCOP00000008459	ENSHCOP00000016627	Dystrobrevin.	Uncharacterized protein.	0.468
LOC109528318	ENSHCOP00000023855	ENSHCOP00000008459	ENSHCOP00000023855	Dystrobrevin.	Uncharacterized protein; May play a role in anchoring the cytoskeleton to the plasma membrane.	0.468