65 items (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2ZX91	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (112 aa)
	A0A0D2ZXN3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (113 aa)
	A0A0D2ZXN4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (165 aa)
	A0A0D3A1H4	Uncharacterized protein. (275 aa)
	A0A0D3A4B2	Uncharacterized protein. (207 aa)
	A0A0D3A4B3	HTH TFE/IIEalpha-type domain-containing protein. (182 aa)
	A0A0D3A4B4	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (288 aa)
	A0A0D3A5Y9	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (149 aa)
	A0A0D3A7F5	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (505 aa)
	A0A0D3AF66	Uncharacterized protein. (448 aa)
	A0A0D3AHZ6	Uncharacterized protein. (204 aa)
	A0A0D3AL23	Uncharacterized protein. (177 aa)
	A0A0D3AP91	Uncharacterized protein. (592 aa)
	A0A0D3APB1	Uncharacterized protein. (179 aa)
	A0A0D3AQR2	TFIIF_beta domain-containing protein. (257 aa)
	A0A0D3AT33	TFIIE beta domain-containing protein. (284 aa)
	A0A0D3AXA0	CYCLIN domain-containing protein; Belongs to the cyclin family. (335 aa)
	A0A0D3B0F0	RPOL4c domain-containing protein. (135 aa)
	A0A0D3B2Q8	Uncharacterized protein. (195 aa)
	A0A0D3B2X3	Uncharacterized protein. (210 aa)
	A0A0D3B5Z0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2056 aa)
	A0A0D3B8K4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (734 aa)
	A0A0D3BA51	Uncharacterized protein. (446 aa)
	A0A0D3BM46	MAT1 domain-containing protein. (177 aa)
	A0A0D3BN94	Uncharacterized protein. (200 aa)
	A0A0D3C7A4	HTH TFE/IIEalpha-type domain-containing protein. (1087 aa)
	A0A0D3C8A6	Uncharacterized protein. (367 aa)
	A0A0D3C9M7	Uncharacterized protein. (70 aa)
	A0A0D3CB70	Uncharacterized protein. (300 aa)
	A0A0D3CM33	Uncharacterized protein. (395 aa)
	A0A0D3CNV5	BSD domain-containing protein. (299 aa)
	A0A0D3CQ81	TFIIA_gamma_C domain-containing protein. (254 aa)
	A0A0D3CSF2	Uncharacterized protein. (200 aa)
	A0A0D3CT86	Helicase ATP-binding domain-containing protein. (488 aa)
	A0A0D3CVI9	Helicase ATP-binding domain-containing protein. (1174 aa)
	A0A0D3CWG4	TFIIF_beta domain-containing protein. (267 aa)
	A0A0D3CYG8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (347 aa)
	A0A0D3D0F0	Protein kinase domain-containing protein. (412 aa)
	A0A0D3D237	Helicase ATP-binding domain-containing protein. (927 aa)
	A0A0D3D418	RPOLD domain-containing protein. (319 aa)
	A0A0D3DBJ4	TFIIB-type domain-containing protein. (336 aa)
	A0A0D3DBT5	Uncharacterized protein. (437 aa)
	A0A0D3DCG8	Uncharacterized protein. (245 aa)
	A0A0D3DE49	TFIIF_beta domain-containing protein. (122 aa)
	A0A0D3DE68	Uncharacterized protein. (127 aa)
	A0A0D3DFV4	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (99 aa)
	A0A0D3DI09	Uncharacterized protein. (502 aa)
	A0A0D3DIM4	Helicase ATP-binding domain-containing protein. (758 aa)
	A0A0D3DIY5	General transcription factor IIH subunit. (422 aa)
	A0A0D3DJB0	Uncharacterized protein. (371 aa)
	A0A0D3DJY0	Uncharacterized protein. (143 aa)
	A0A0D3DM65	Uncharacterized protein. (112 aa)
	A0A0D3DMQ8	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	A0A0D3DQ48	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (393 aa)
	A0A0D3DQ66	Uncharacterized protein. (261 aa)
	A0A0D3DS74	TFIIF_beta domain-containing protein. (258 aa)
	A0A0D3DWQ5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (389 aa)
	A0A0D3DYK9	Uncharacterized protein. (375 aa)
	A0A0D3E0N2	TFIIB-type domain-containing protein. (326 aa)
	A0A0D3E139	CYCLIN domain-containing protein; Belongs to the cyclin family. (334 aa)
	A0A0D3E8D4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (578 aa)
	A0A0D3EAW6	Uncharacterized protein. (212 aa)
	A0A0D3ECM8	Uncharacterized protein. (200 aa)
	A0A0D3ECN3	Uncharacterized protein. (183 aa)
	A0A0D3EGM3	RPOL4c domain-containing protein. (138 aa)

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2ZX91	A0A0D3A1H4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.876
A0A0D2ZX91	A0A0D3A4B2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.945
A0A0D2ZX91	A0A0D3A4B3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	HTH TFE/IIEalpha-type domain-containing protein.	0.945
A0A0D2ZX91	A0A0D3A4B4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.976
A0A0D2ZX91	A0A0D3A5Y9	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.928
A0A0D2ZX91	A0A0D3A7F5	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.981
A0A0D2ZX91	A0A0D3AF66	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.878
A0A0D2ZX91	A0A0D3AHZ6	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.876
A0A0D2ZX91	A0A0D3AL23	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.874
A0A0D2ZX91	A0A0D3AP91	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.967
A0A0D2ZX91	A0A0D3APB1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.873
A0A0D2ZX91	A0A0D3AQR2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TFIIF_beta domain-containing protein.	0.939
A0A0D2ZX91	A0A0D3AT33	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TFIIE beta domain-containing protein.	0.976
A0A0D2ZX91	A0A0D3AXA0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.875
A0A0D2ZX91	A0A0D3B0F0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	RPOL4c domain-containing protein.	0.873
A0A0D2ZX91	A0A0D3B2Q8	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.874
A0A0D2ZX91	A0A0D3B2X3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.867
A0A0D2ZX91	A0A0D3B5Z0	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.811
A0A0D2ZX91	A0A0D3BA51	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Uncharacterized protein.	0.878
A0A0D2ZX91	A0A0D3BM46	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	MAT1 domain-containing protein.	0.972