(24 nodes) Mixed, incl. Calcineurin B-like, and Sodium ion import across plasma membrane network (Brassica oleracea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3A2C7	Uncharacterized protein. (249 aa)
	A0A0D3A300	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (441 aa)
	A0A0D3A455	Protein kinase domain-containing protein. (662 aa)
	A0A0D3A543	Uncharacterized protein. (788 aa)
	A0A0D3AFX2	Uncharacterized protein. (169 aa)
	A0A0D3AT80	Uncharacterized protein. (507 aa)
	A0A0D3AX71	Na_H_Exchanger domain-containing protein. (544 aa)
	A0A0D3AXX9	Uncharacterized protein. (221 aa)
	A0A0D3B7Z4	Uncharacterized protein. (514 aa)
	A0A0D3BBT2	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (444 aa)
	A0A0D3BLQ5	Uncharacterized protein. (246 aa)
	A0A0D3BM38	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (432 aa)
	A0A0D3BTJ5	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (443 aa)
	A0A0D3C005	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (453 aa)
	A0A0D3CAK1	Uncharacterized protein. (811 aa)
	A0A0D3CMC5	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (560 aa)
	A0A0D3CMP5	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (549 aa)
	A0A0D3DD56	Uncharacterized protein. (221 aa)
	A0A0D3DH40	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (431 aa)
	A0A0D3DHE9	Uncharacterized protein. (249 aa)
	A0A0D3E115	Na_H_Exchanger domain-containing protein. (535 aa)
	A0A0D3E1G7	EF-hand domain-containing protein. (87 aa)
	A0A0D3E7I1	Uncharacterized protein. (1139 aa)
	A0A0D3EDT3	Uncharacterized protein. (148 aa)

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3A2C7	A0A0D3A300	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.569
A0A0D3A2C7	A0A0D3A543	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A0D3A2C7	A0A0D3AX71	Uncharacterized protein.	Na_H_Exchanger domain-containing protein.	0.444
A0A0D3A2C7	A0A0D3BBT2	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.444
A0A0D3A2C7	A0A0D3BM38	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.569
A0A0D3A2C7	A0A0D3BTJ5	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.492
A0A0D3A2C7	A0A0D3C005	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.933
A0A0D3A2C7	A0A0D3DH40	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.569
A0A0D3A2C7	A0A0D3E115	Uncharacterized protein.	Na_H_Exchanger domain-containing protein.	0.444
A0A0D3A2C7	A0A0D3E7I1	Uncharacterized protein.	Uncharacterized protein.	0.612
A0A0D3A300	A0A0D3A2C7	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.569
A0A0D3A300	A0A0D3A543	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.558
A0A0D3A300	A0A0D3AXX9	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.630
A0A0D3A300	A0A0D3BLQ5	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.569
A0A0D3A300	A0A0D3DD56	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.630
A0A0D3A300	A0A0D3DHE9	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.569
A0A0D3A300	A0A0D3E1G7	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	EF-hand domain-containing protein.	0.630
A0A0D3A300	A0A0D3EDT3	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.574
A0A0D3A455	A0A0D3A543	Protein kinase domain-containing protein.	Uncharacterized protein.	0.580
A0A0D3A543	A0A0D3A2C7	Uncharacterized protein.	Uncharacterized protein.	0.467