25 items (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2ZUL0	Dof-type domain-containing protein. (243 aa)
	A0A0D3A4R0	Dof-type domain-containing protein. (102 aa)
	A0A0D3ADW5	Uncharacterized protein. (120 aa)
	A0A0D3AHY0	Uncharacterized protein. (276 aa)
	A0A0D3AZV9	Uncharacterized protein. (170 aa)
	A0A0D3B7I2	Protein kinase domain-containing protein. (602 aa)
	A0A0D3BCX8	Uncharacterized protein. (74 aa)
	A0A0D3BHB6	Uncharacterized protein. (188 aa)
	A0A0D3BIM5	AP2/ERF domain-containing protein. (172 aa)
	A0A0D3BMQ3	Dof-type domain-containing protein. (194 aa)
	A0A0D3BZP4	Uncharacterized protein. (268 aa)
	A0A0D3C584	MATH domain-containing protein. (82 aa)
	A0A0D3CI17	Protein kinase domain-containing protein. (72 aa)
	A0A0D3CQD3	AP2/ERF domain-containing protein. (201 aa)
	A0A0D3CQM6	AP2/ERF domain-containing protein. (178 aa)
	A0A0D3CRK4	Dof-type domain-containing protein. (184 aa)
	A0A0D3D039	AP2/ERF domain-containing protein. (257 aa)
	A0A0D3D9K4	Uncharacterized protein. (226 aa)
	A0A0D3DAP4	SAM domain-containing protein. (265 aa)
	A0A0D3DF79	Dof-type domain-containing protein. (145 aa)
	A0A0D3DJT0	t-SNARE coiled-coil homology domain-containing protein. (126 aa)
	A0A0D3DRM7	SAM domain-containing protein. (261 aa)
	A0A0D3DRV8	AP2/ERF domain-containing protein. (162 aa)
	A0A0D3EDK5	Uncharacterized protein. (154 aa)
	A0A0D3EDT0	Dilute domain-containing protein. (420 aa)

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2ZUL0	A0A0D3ADW5	Dof-type domain-containing protein.	Uncharacterized protein.	0.473
A0A0D2ZUL0	A0A0D3AHY0	Dof-type domain-containing protein.	Uncharacterized protein.	0.523
A0A0D2ZUL0	A0A0D3AZV9	Dof-type domain-containing protein.	Uncharacterized protein.	0.538
A0A0D2ZUL0	A0A0D3B7I2	Dof-type domain-containing protein.	Protein kinase domain-containing protein.	0.472
A0A0D2ZUL0	A0A0D3BCX8	Dof-type domain-containing protein.	Uncharacterized protein.	0.501
A0A0D2ZUL0	A0A0D3BHB6	Dof-type domain-containing protein.	Uncharacterized protein.	0.471
A0A0D2ZUL0	A0A0D3BIM5	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.536
A0A0D2ZUL0	A0A0D3BZP4	Dof-type domain-containing protein.	Uncharacterized protein.	0.508
A0A0D2ZUL0	A0A0D3C584	Dof-type domain-containing protein.	MATH domain-containing protein.	0.442
A0A0D2ZUL0	A0A0D3CI17	Dof-type domain-containing protein.	Protein kinase domain-containing protein.	0.489
A0A0D2ZUL0	A0A0D3CQD3	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.533
A0A0D2ZUL0	A0A0D3CQM6	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.535
A0A0D2ZUL0	A0A0D3D039	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.533
A0A0D2ZUL0	A0A0D3D9K4	Dof-type domain-containing protein.	Uncharacterized protein.	0.454
A0A0D2ZUL0	A0A0D3DAP4	Dof-type domain-containing protein.	SAM domain-containing protein.	0.533
A0A0D2ZUL0	A0A0D3DJT0	Dof-type domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.469
A0A0D2ZUL0	A0A0D3DRM7	Dof-type domain-containing protein.	SAM domain-containing protein.	0.490
A0A0D2ZUL0	A0A0D3DRV8	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.517
A0A0D2ZUL0	A0A0D3EDK5	Dof-type domain-containing protein.	Uncharacterized protein.	0.506
A0A0D2ZUL0	A0A0D3EDT0	Dof-type domain-containing protein.	Dilute domain-containing protein.	0.527