117 items (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3BQF6	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (314 aa)
	A0A0D2ZZZ7	Uncharacterized protein. (75 aa)
	A0A0D3A344	Uncharacterized protein. (180 aa)
	A0A0D3A5W1	F-box domain-containing protein. (146 aa)
	A0A0D3A6A7	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (376 aa)
	A0A0D3A6I9	GATA-type domain-containing protein. (360 aa)
	A0A0D3ACA8	Uncharacterized protein. (106 aa)
	A0A0D3AEG9	Uncharacterized protein. (453 aa)
	A0A0D3AET0	Uncharacterized protein. (128 aa)
	A0A0D3AFY4	Uncharacterized protein. (96 aa)
	A0A0D3AHZ8	C2H2-type domain-containing protein. (180 aa)
	A0A0D3AIK0	BZIP domain-containing protein. (162 aa)
	A0A0D3AJ59	BHLH domain-containing protein. (93 aa)
	A0A0D3AJ64	Uncharacterized protein. (106 aa)
	A0A0D3AJQ6	Protein kinase domain-containing protein. (690 aa)
	A0A0D3AND1	GRAS domain-containing protein; Belongs to the GRAS family. (507 aa)
	A0A0D3ANX2	Uncharacterized protein. (285 aa)
	A0A0D3ANX7	C2H2-type domain-containing protein. (232 aa)
	A0A0D3AQI0	BHLH domain-containing protein. (93 aa)
	A0A0D3AQV1	Uncharacterized protein. (67 aa)
	A0A0D3AVQ1	HTH myb-type domain-containing protein. (421 aa)
	A0A0D3AWF8	BHLH domain-containing protein. (92 aa)
	A0A0D3AWS8	F-box domain-containing protein. (156 aa)
	A0A0D3AY86	Floricaula/leafy-like transcription factor; Probable transcription factor. Belongs to the FLO/LFY family. (419 aa)
	A0A0D3AYH5	Uncharacterized protein. (99 aa)
	A0A0D3AYU5	C2H2-type domain-containing protein. (476 aa)
	A0A0D3B185	Uncharacterized protein. (106 aa)
	A0A0D3B1S0	Protein kinase domain-containing protein. (684 aa)
	A0A0D3B4J1	Uncharacterized protein. (444 aa)
	A0A0D3B5X7	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (318 aa)
	A0A0D3B6B0	C2H2-type domain-containing protein. (251 aa)
	A0A0D3B7B8	RBR-type E3 ubiquitin transferase. (271 aa)
	A0A0D3B7V8	Uncharacterized protein. (101 aa)
	A0A0D3B995	Uncharacterized protein. (210 aa)
	A0A0D3BAR5	TPR_REGION domain-containing protein. (900 aa)
	A0A0D3BDQ7	Uncharacterized protein. (106 aa)
	A0A0D3BEG1	BHLH domain-containing protein. (341 aa)
	A0A0D3BFE6	CBFD_NFYB_HMF domain-containing protein. (246 aa)
	A0A0D3BFZ2	Floricaula/leafy-like transcription factor; Probable transcription factor. Belongs to the FLO/LFY family. (415 aa)
	A0A0D3BHW8	BHLH domain-containing protein. (93 aa)
	A0A0D3BI96	AP2/ERF domain-containing protein. (322 aa)
	A0A0D3BM67	Uncharacterized protein. (180 aa)
	A0A0D3BP77	C2H2-type domain-containing protein. (315 aa)
	A0A0D3BPH3	Uncharacterized protein. (157 aa)
	A0A0D3BST4	Uncharacterized protein. (481 aa)
	A0A0D3BUC4	RBR-type E3 ubiquitin transferase. (395 aa)
	A0A0D3BUG4	NAC domain-containing protein. (345 aa)
	A0A0D3BUI8	GRAS domain-containing protein; Belongs to the GRAS family. (150 aa)
	A0A0D3BZV9	ZF-HD dimerization-type domain-containing protein. (277 aa)
	A0A0D3C157	Uncharacterized protein. (285 aa)
	A0A0D3C3N3	Uncharacterized protein. (467 aa)
	A0A0D3C5Q8	C2H2-type domain-containing protein. (256 aa)
	A0A0D3C5X8	Uncharacterized protein. (154 aa)
	A0A0D3C5Y7	Uncharacterized protein. (117 aa)
	A0A0D3C7E3	C2H2-type domain-containing protein. (479 aa)
	A0A0D3C8M0	CBFD_NFYB_HMF domain-containing protein. (277 aa)
	A0A0D3C8S3	BHLH domain-containing protein. (491 aa)
	A0A0D3CAJ2	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (359 aa)
	A0A0D3CL54	TPR_REGION domain-containing protein. (914 aa)
	A0A0D3CL71	Uncharacterized protein. (502 aa)
	A0A0D3CLI6	Uncharacterized protein. (156 aa)
	A0A0D3CN13	GRAS domain-containing protein; Belongs to the GRAS family. (544 aa)
	A0A0D3CND0	Uncharacterized protein. (242 aa)
	A0A0D3CP53	G_PROTEIN_RECEP_F2_4 domain-containing protein. (381 aa)
	A0A0D3CSZ6	BHLH domain-containing protein. (92 aa)
	A0A0D3CUH8	C2H2-type domain-containing protein. (239 aa)
	A0A0D3CWF4	Uncharacterized protein. (98 aa)
	A0A0D3CWN2	BHLH domain-containing protein. (93 aa)
	A0A0D3CXW1	Uncharacterized protein. (277 aa)
	A0A0D3CYJ9	C2H2-type domain-containing protein. (196 aa)
	A0A0D3CYX2	Uncharacterized protein. (285 aa)
	A0A0D3CYX5	C2H2-type domain-containing protein. (238 aa)
	A0A0D3D0N5	BHLH domain-containing protein. (90 aa)
	A0A0D3D0Y9	Uncharacterized protein. (98 aa)
	A0A0D3D1U6	Uncharacterized protein; Belongs to the terpene synthase family. (781 aa)
	A0A0D3D2D2	BHLH domain-containing protein. (505 aa)
	A0A0D3D328	BHLH domain-containing protein. (337 aa)
	A0A0D3D3N4	Protein kinase domain-containing protein. (636 aa)
	A0A0D3D475	Lipase; Belongs to the AB hydrolase superfamily. Lipase family. (395 aa)
	A0A0D3D6K5	AP2/ERF domain-containing protein. (299 aa)
	A0A0D3D8I7	Uncharacterized protein. (338 aa)
	A0A0D3DA46	GRAS domain-containing protein; Belongs to the GRAS family. (579 aa)
	A0A0D3DAN0	HTH myb-type domain-containing protein. (423 aa)
	A0A0D3DBD7	Uncharacterized protein. (265 aa)
	A0A0D3DBQ5	F-box domain-containing protein. (200 aa)
	A0A0D3DBZ2	Uncharacterized protein. (212 aa)
	A0A0D3DCR3	Uncharacterized protein; Belongs to the cytochrome P450 family. (520 aa)
	A0A0D3DG31	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (383 aa)
	A0A0D3DG75	GATA-type domain-containing protein. (383 aa)
	A0A0D3DNJ2	CBFD_NFYB_HMF domain-containing protein. (349 aa)
	A0A0D3DNX4	C2H2-type domain-containing protein. (206 aa)
	A0A0D3DS02	C2H2-type domain-containing protein. (435 aa)
	A0A0D3DU38	C2H2-type domain-containing protein. (252 aa)
	A0A0D3DVC9	Uncharacterized protein. (403 aa)
	A0A0D3DVP6	Uncharacterized protein. (213 aa)
	A0A0D3DVR3	Uncharacterized protein. (210 aa)
	A0A0D3DX48	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (358 aa)
	A0A0D3DY51	C2H2-type domain-containing protein. (204 aa)
	A0A0D3DYB3	BHLH domain-containing protein. (491 aa)
	A0A0D3DZ45	C2H2-type domain-containing protein. (488 aa)
	A0A0D3E052	Uncharacterized protein; Belongs to the terpene synthase family. (785 aa)
	A0A0D3E0I2	Uncharacterized protein. (232 aa)
	A0A0D3E0L2	BHLH domain-containing protein. (92 aa)
	A0A0D3E0S6	F-box domain-containing protein. (138 aa)
	A0A0D3E218	SAP domain-containing protein. (427 aa)
	A0A0D3E2M2	C2H2-type domain-containing protein. (524 aa)
	A0A0D3E2X5	Uncharacterized protein. (108 aa)
	A0A0D3E324	Protein kinase domain-containing protein. (677 aa)
	A0A0D3E3B2	BHLH domain-containing protein. (332 aa)
	A0A0D3E7F3	GRAS domain-containing protein; Belongs to the GRAS family. (583 aa)
	A0A0D3E8P3	GRAS domain-containing protein; Belongs to the GRAS family. (151 aa)
	A0A0D3E9K4	Uncharacterized protein. (109 aa)
	A0A0D3EEI8	Protein kinase domain-containing protein. (690 aa)
	A0A0D3EER5	GRAS domain-containing protein; Belongs to the GRAS family. (525 aa)
	A0A0D3EFN3	AP2/ERF domain-containing protein. (211 aa)
	A0A0D3EG97	BZIP domain-containing protein. (164 aa)
	A0A0D3EI08	F-box domain-containing protein. (411 aa)

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3A344	A0A0D3BPH3	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A0D3A5W1	A0A0D3A6A7	F-box domain-containing protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.487
A0A0D3A5W1	A0A0D3AET0	F-box domain-containing protein.	Uncharacterized protein.	0.401
A0A0D3A5W1	A0A0D3AFY4	F-box domain-containing protein.	Uncharacterized protein.	0.419
A0A0D3A5W1	A0A0D3AND1	F-box domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.974
A0A0D3A5W1	A0A0D3AYH5	F-box domain-containing protein.	Uncharacterized protein.	0.412
A0A0D3A5W1	A0A0D3BUI8	F-box domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.845
A0A0D3A5W1	A0A0D3CAJ2	F-box domain-containing protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.514
A0A0D3A5W1	A0A0D3CLI6	F-box domain-containing protein.	Uncharacterized protein.	0.418
A0A0D3A5W1	A0A0D3CN13	F-box domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.974
A0A0D3A5W1	A0A0D3D1U6	F-box domain-containing protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.546
A0A0D3A5W1	A0A0D3DA46	F-box domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.983
A0A0D3A5W1	A0A0D3DCR3	F-box domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.489
A0A0D3A5W1	A0A0D3DG31	F-box domain-containing protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.487
A0A0D3A5W1	A0A0D3DX48	F-box domain-containing protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.514
A0A0D3A5W1	A0A0D3E052	F-box domain-containing protein.	Uncharacterized protein; Belongs to the terpene synthase family.	0.447
A0A0D3A5W1	A0A0D3E7F3	F-box domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.872
A0A0D3A5W1	A0A0D3E8P3	F-box domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.845
A0A0D3A5W1	A0A0D3EER5	F-box domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.970
A0A0D3A6A7	A0A0D3A5W1	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	F-box domain-containing protein.	0.487