33 items (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EGY3	Uncharacterized protein. (327 aa)
	A0A0D3EIB8	Dof-type domain-containing protein. (392 aa)
	A0A0D3BR64	Dof-type domain-containing protein. (325 aa)
	A0A0D2ZR48	Uncharacterized protein. (97 aa)
	A0A0D2ZR49	Uncharacterized protein. (158 aa)
	A0A0D3A3B6	WD_REPEATS_REGION domain-containing protein. (386 aa)
	A0A0D3A6Q4	Germin-like protein. (189 aa)
	A0A0D3ADF8	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (250 aa)
	A0A0D3AFE2	Germin-like protein. (218 aa)
	A0A0D3AHH2	Dof-type domain-containing protein. (403 aa)
	A0A0D3AI56	Uncharacterized protein. (114 aa)
	A0A0D3ANQ9	PAP2_C domain-containing protein. (453 aa)
	A0A0D3AZF4	Dof-type domain-containing protein. (406 aa)
	A0A0D3B5F7	Dof-type domain-containing protein. (277 aa)
	A0A0D3B6L1	Formin-like protein; Belongs to the formin-like family. (869 aa)
	A0A0D3B9W4	Germin-like protein. (218 aa)
	A0A0D3BBH0	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (704 aa)
	A0A0D3BPM5	Formin-like protein; Belongs to the formin-like family. (834 aa)
	A0A0D3BSG4	Uncharacterized protein. (302 aa)
	A0A0D3C4U0	Dof-type domain-containing protein. (309 aa)
	A0A0D3C734	Germin-like protein. (218 aa)
	A0A0D3C7J6	Uncharacterized protein. (303 aa)
	A0A0D3C8T0	Germin-like protein. (223 aa)
	A0A0D3CMG3	Germin-like protein. (218 aa)
	A0A0D3CMU2	Uncharacterized protein. (320 aa)
	A0A0D3CZH5	Uncharacterized protein. (124 aa)
	A0A0D3D408	Thioredoxin domain-containing protein. (209 aa)
	A0A0D3D8S3	Uncharacterized protein. (298 aa)
	A0A0D3DCL7	Germin-like protein. (218 aa)
	A0A0D3DNP7	Germin-like protein. (220 aa)
	A0A0D3DPD5	Uncharacterized protein. (957 aa)
	A0A0D3DYA8	Germin-like protein. (216 aa)
	A0A0D3E4V1	Uncharacterized protein. (382 aa)

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3A3B6	A0A0D3CZH5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.597
A0A0D3A3B6	A0A0D3DPD5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.619
A0A0D3CZH5	A0A0D3A3B6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.597
A0A0D3CZH5	A0A0D3D8S3	Uncharacterized protein.	Uncharacterized protein.	0.530
A0A0D3CZH5	A0A0D3DPD5	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A0D3D8S3	A0A0D3CZH5	Uncharacterized protein.	Uncharacterized protein.	0.530
A0A0D3D8S3	A0A0D3DPD5	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A0D3DPD5	A0A0D3A3B6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.619
A0A0D3DPD5	A0A0D3CZH5	Uncharacterized protein.	Uncharacterized protein.	0.669
A0A0D3DPD5	A0A0D3D8S3	Uncharacterized protein.	Uncharacterized protein.	0.539