STRINGSTRING
sprE sprE yoqW yoqW KQS_00325 KQS_00325 batC batC batD batD recO recO dksA dksA rplY rplY KQS_00540 KQS_00540 KQS_00560 KQS_00560 KQS_00915 KQS_00915 KQS_00945 KQS_00945 rpsP rpsP KQS_01430 KQS_01430 KQS_01460 KQS_01460 KQS_01565 KQS_01565 KQS_01885 KQS_01885 hupA hupA KQS_02080 KQS_02080 KQS_02150 KQS_02150 rplU rplU rpsB rpsB rpsI rpsI rplM rplM cutC cutC dtd dtd radC radC KQS_02760 KQS_02760 rpsG rpsG rpmF rpmF rpsJ rpsJ rplC rplC rplW rplW rplB rplB rpsS rpsS rpsC rpsC rpmC rpmC rpsQ rpsQ rplN rplN rplE rplE rpsN rpsN rpsH rpsH rplR rplR rpsE rpsE rpmD rpmD rplO rplO rpmJ rpmJ rpsK rpsK rplQ rplQ kynU kynU KQS_03230 KQS_03230 recR recR KQS_03395 KQS_03395 recQ1 recQ1 KQS_03740 KQS_03740 npdA npdA fadD fadD KQS_04205 KQS_04205 KQS_04310 KQS_04310 dnaB dnaB rpmI rpmI rpmH rpmH crtI crtI neuB neuB KQS_05005 KQS_05005 KQS_05165 KQS_05165 KQS_05640 KQS_05640 ilvC ilvC KQS_06450 KQS_06450 KQS_06705 KQS_06705 KQS_07060 KQS_07060 recQ2 recQ2 hupB hupB KQS_07635 KQS_07635 KQS_08240 KQS_08240 KQS_08560 KQS_08560 dgkA dgkA KQS_08635 KQS_08635 KQS_08760 KQS_08760 rpmE rpmE KQS_09340 KQS_09340 recN recN rpsR rpsR rpsF rpsF priA priA fjo19 fjo19 rpsT rpsT udk udk KQS_09935 KQS_09935 rhlE rhlE nth nth rpmG rpmG rpmB rpmB KQS_10270 KQS_10270 KQS_10405 KQS_10405 parB parB recF recF rplL rplL rplJ rplJ KQS_10800 KQS_10800 rpsU rpsU KQS_11105 KQS_11105 rpsO rpsO dnaG dnaG KQS_12020 KQS_12020 KQS_12125 KQS_12125 KQS_12240 KQS_12240 KQS_12415 KQS_12415 KQS_12680 KQS_12680 KQS_12725 KQS_12725
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sprESprE lipoprotein precursor. (858 aa)
yoqWProtein of unknown function YoqW; Belongs to the SOS response-associated peptidase family. (198 aa)
KQS_00325ATPase, MoxR family. (334 aa)
batCBatC protein. (251 aa)
batDBatD protein. (583 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (237 aa)
dksADnaK suppressor protein. (126 aa)
rplY50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (201 aa)
KQS_00540Putative DNA repair protein RadC. (144 aa)
KQS_00560Protein of unknown function. (514 aa)
KQS_00915Protein of unknown function. (106 aa)
KQS_00945Probable Helicase. (399 aa)
rpsP30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (184 aa)
KQS_01430Protein of unknown function. (888 aa)
KQS_01460Enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (248 aa)
KQS_01565Probable transmembrane protein of unknown function. (408 aa)
KQS_01885Carbonic anhydrase/acetyltransferase family protein. (172 aa)
hupAHistone-like bacterial DNA-binding protein HU-alpha. (97 aa)
KQS_02080Protein of unknown function. (130 aa)
KQS_02150Protein of unknown function. (365 aa)
rplU50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (139 aa)
rpsB30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (252 aa)
rpsI30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (128 aa)
rplM50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (161 aa)
cutCCopper homeostasis protein cutC; Participates in the control of copper homeostasis. Belongs to the CutC family. (222 aa)
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (150 aa)
radCDNA repair protein RadC; Belongs to the UPF0758 family. (227 aa)
KQS_02760Putative AAA family ATPase. (425 aa)
rpsG30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (158 aa)
rpmF50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (64 aa)
rpsJ30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (101 aa)
rplC50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (205 aa)
rplW50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (96 aa)
rplB50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa)
rpsS30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
rpsC30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (243 aa)
rpmC50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (60 aa)
rpsQ30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (85 aa)
rplN50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rplE50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (183 aa)
rpsN30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa)
rpsH30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa)
rplR50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (116 aa)
rpsE30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (174 aa)
rpmD50S ribosomal protein L30. (60 aa)
rplO50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (150 aa)
rpmJ50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (38 aa)
rpsK30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (127 aa)
rplQ50S ribosomal protein L17. (162 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (429 aa)
KQS_03230Protein of unknown function. (305 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (206 aa)
KQS_03395N-acetylneuraminate synthase. (336 aa)
recQ1ATP-dependent DNA helicase RecQ1. (731 aa)
KQS_03740Probable ATP-dependent RNA helicase, DEAD/DEAH box family; Belongs to the DEAD box helicase family. (626 aa)
npdANAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily. (229 aa)
fadDLong-chain-fatty-acid--CoA ligase. (593 aa)
KQS_04205Protein of unknown function precursor. (359 aa)
KQS_04310ATP-dependent RNA helicase, DEAD box family. (202 aa)
dnaBReplicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (519 aa)
rpmI50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)
rpmH50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (53 aa)
crtIPhytoene dehydrogenase. (487 aa)
neuBSialic acid synthase (N-acetylneuraminic acid synthetase). (341 aa)
KQS_05005Two-component system sensor histidine kinase. (455 aa)
KQS_05165Protein of unknown function containing tetratricopeptide repeats. (464 aa)
KQS_05640Protein of unknown function. (254 aa)
ilvCKetol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (347 aa)
KQS_06450Protein of unknown function; Belongs to the Cob(I)alamin adenosyltransferase family. (192 aa)
KQS_06705Probable ATP-dependent exodeoxyribonuclease. (474 aa)
KQS_07060Probable phosphohydrolase. (408 aa)
recQ2ATP-dependent DNA helicase RecQ2. (627 aa)
hupBHistone-like bacterial DNA-binding protein HU-beta. (92 aa)
KQS_07635DNA binding protein of unknown function (CHC2 zinc finger). (761 aa)
KQS_08240Protein of unknown function. (203 aa)
KQS_08560Probable transposase; Belongs to the 'phage' integrase family. (417 aa)
dgkADiacylglycerol kinase. (122 aa)
KQS_08635Probable ATP-dependent RNA helicase, DEAD/DEAH box family. (431 aa)
KQS_08760Hypothetical protein precursor. (169 aa)
rpmE50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (83 aa)
KQS_09340Protein of unknown function; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa)
recNDNA repair protein recN; May be involved in recombinational repair of damaged DNA. (550 aa)
rpsR30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (97 aa)
rpsF30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (113 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (812 aa)
fjo19Protein of unknown function Fjo19. (338 aa)
rpsT30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (83 aa)
udkUridine kinase. (203 aa)
KQS_09935Flagellar motor/Chemotaxis (MotB)-related lipoprotein precursor. (277 aa)
rhlEPutative ATP-dependent RNA helicase RhlE. (447 aa)
nthDNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (220 aa)
rpmG50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (60 aa)
rpmB50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)
KQS_10270ATPase, MoxR family. (317 aa)
KQS_10405Protein of unknown function. (107 aa)
parBChromosome partitioning protein ParB; Belongs to the ParB family. (299 aa)
recFDNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (359 aa)
rplL50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (123 aa)
rplJ50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (167 aa)
KQS_10800Protein of unknown function. (100 aa)
rpsU30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (64 aa)
KQS_11105Protein of unknown function precursor. (264 aa)
rpsO30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (658 aa)
KQS_12020Protein of unknown function. (122 aa)
KQS_12125dCMP deaminase. (143 aa)
KQS_12240Protein of unknown function. (233 aa)
KQS_12415Protein of unknown function. (264 aa)
KQS_12680Flagellar motor/Chemotaxis (MotB)-related lipoprotein precursor. (321 aa)
KQS_12725Protein of unknown function precursor. (440 aa)
Your Current Organism:
Flavobacterium indicum
NCBI taxonomy Id: 1094466
Other names: F. indicum GPTSA100-9 = DSM 17447, Flavobacterium indicum CIP 109464, Flavobacterium indicum DSM 17447, Flavobacterium indicum DSM 17447 = GPTSA100-9, Flavobacterium indicum GPTSA100-9, Flavobacterium indicum GPTSA100-9 = DSM 17447, Flavobacterium sp. GPTSA100-9
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