STRINGSTRING
Tsac_0143 Tsac_0143 kduI kduI Tsac_0159 Tsac_0159 Tsac_0164 Tsac_0164 Tsac_0168 Tsac_0168
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tsac_0143KEGG: txy:Thexy_2035 2-deoxy-D-gluconate 3-dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR. (259 aa)
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (276 aa)
Tsac_0159PFAM: Xylose isomerase, TIM barrel domain; KEGG: tit:Thit_1729 xylose isomerase. (280 aa)
Tsac_0164PFAM: Glycoside hydrolase, family 28; KEGG: txy:Thexy_2050 polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (518 aa)
Tsac_0168PFAM: Glycosyl hydrolase, family 88; KEGG: txy:Thexy_2054 glycosyl hydrolase family 88. (361 aa)
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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