STRINGSTRING
Tsac_1728 Tsac_1728 Tsac_1285 Tsac_1285 nanE nanE Tsac_2329 Tsac_2329 Tsac_2669 Tsac_2669 Tsac_0313 Tsac_0313 Tsac_1296 Tsac_1296
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tsac_1728KEGG: txy:Thexy_1384 ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase. (217 aa)
Tsac_1285PFAM: Class II aldolase/adducin, N-terminal; KEGG: txy:Thexy_0556 L-ribulose-5-phosphate 4-epimerase. (213 aa)
nanEN-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P). (234 aa)
Tsac_2329N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man). (392 aa)
Tsac_2669KEGG: tit:Thit_0480 UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing; PFAM: UDP-N-acetylglucosamine 2-epimerase. (384 aa)
Tsac_0313KEGG: txy:Thexy_2189 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase. (383 aa)
Tsac_1296KEGG: txy:Thexy_0569 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (329 aa)
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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