STRINGSTRING
Tsac_1448 Tsac_1448 Tsac_1191 Tsac_1191 Tsac_1459 Tsac_1459 Tsac_1460 Tsac_1460 Tsac_1835 Tsac_1835 xynB xynB Tsac_0363 Tsac_0363 Tsac_0898 Tsac_0898
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tsac_1448PFAM: Glycosyl hydrolase 67 middle; Glycoside hydrolase family 67; Glycosyl hydrolase 67, C-terminal; KEGG: txy:Thexy_1741 alpha-glucuronidase. (704 aa)
Tsac_1191KEGG: txy:Thexy_0461 delta-lactam-biosynthetic de-N-acetylase; TIGRFAM: Delta-lactam-biosynthetic de-N-acetylase; PFAM: Polysaccharide deacetylase. (320 aa)
Tsac_1459Glycoside hydrolase family 10; KEGG: txy:Thexy_1730 Cellulose 1,4-beta-cellobiosidase; PFAM: Glycoside hydrolase, family 10; Carbohydrate-binding, CenC-like; Carbohydrate-binding domain, family 9; S-layer homology region; SMART: Glycoside hydrolase, family 10. (1432 aa)
Tsac_1460KEGG: txy:Thexy_1729 glycoside hydrolase family 10; PFAM: Glycoside hydrolase, family 10; SMART: Glycoside hydrolase, family 10. (413 aa)
Tsac_1835PFAM: Polysaccharide deacetylase; KEGG: txy:Thexy_1279 polysaccharide deacetylase. (236 aa)
xynBPFAM: Glycoside hydrolase, family 39; KEGG: txy:Thexy_1737 Xylan 1,4-beta-xylosidase. (500 aa)
Tsac_0363PFAM: Polysaccharide deacetylase; KEGG: txy:Thexy_2245 polysaccharide deacetylase. (286 aa)
Tsac_0898PFAM: Sulphatase-modifying factor; KEGG: cbe:Cbei_3040 hypothetical protein. (287 aa)
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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