(5 nodes) Organellar ribosome network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4ZUW2_PHYSP	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (312 aa)
	G4ZV71_PHYSP	Uncharacterized protein. (90 aa)
	G5A5W7_PHYSP	Uncharacterized protein. (141 aa)
	G5A7T9_PHYSP	Uncharacterized protein. (271 aa)
	G5AI54_PHYSP	Uncharacterized protein. (413 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4ZUW2_PHYSP	G4ZV71_PHYSP	G4ZUW2	G4ZV71	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.981
G4ZUW2_PHYSP	G5A5W7_PHYSP	G4ZUW2	G5A5W7	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.989
G4ZUW2_PHYSP	G5A7T9_PHYSP	G4ZUW2	G5A7T9	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.996
G4ZUW2_PHYSP	G5AI54_PHYSP	G4ZUW2	G5AI54	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
G4ZV71_PHYSP	G4ZUW2_PHYSP	G4ZV71	G4ZUW2	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.981
G4ZV71_PHYSP	G5A5W7_PHYSP	G4ZV71	G5A5W7	Uncharacterized protein.	Uncharacterized protein.	0.993
G4ZV71_PHYSP	G5A7T9_PHYSP	G4ZV71	G5A7T9	Uncharacterized protein.	Uncharacterized protein.	0.996
G4ZV71_PHYSP	G5AI54_PHYSP	G4ZV71	G5AI54	Uncharacterized protein.	Uncharacterized protein.	0.986
G5A5W7_PHYSP	G4ZUW2_PHYSP	G5A5W7	G4ZUW2	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.989
G5A5W7_PHYSP	G4ZV71_PHYSP	G5A5W7	G4ZV71	Uncharacterized protein.	Uncharacterized protein.	0.993
G5A5W7_PHYSP	G5A7T9_PHYSP	G5A5W7	G5A7T9	Uncharacterized protein.	Uncharacterized protein.	0.988
G5A5W7_PHYSP	G5AI54_PHYSP	G5A5W7	G5AI54	Uncharacterized protein.	Uncharacterized protein.	0.981
G5A7T9_PHYSP	G4ZUW2_PHYSP	G5A7T9	G4ZUW2	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.996
G5A7T9_PHYSP	G4ZV71_PHYSP	G5A7T9	G4ZV71	Uncharacterized protein.	Uncharacterized protein.	0.996
G5A7T9_PHYSP	G5A5W7_PHYSP	G5A7T9	G5A5W7	Uncharacterized protein.	Uncharacterized protein.	0.988
G5A7T9_PHYSP	G5AI54_PHYSP	G5A7T9	G5AI54	Uncharacterized protein.	Uncharacterized protein.	0.996
G5AI54_PHYSP	G4ZUW2_PHYSP	G5AI54	G4ZUW2	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
G5AI54_PHYSP	G4ZV71_PHYSP	G5AI54	G4ZV71	Uncharacterized protein.	Uncharacterized protein.	0.986
G5AI54_PHYSP	G5A5W7_PHYSP	G5AI54	G5A5W7	Uncharacterized protein.	Uncharacterized protein.	0.981
G5AI54_PHYSP	G5A7T9_PHYSP	G5AI54	G5A7T9	Uncharacterized protein.	Uncharacterized protein.	0.996