(15 nodes) Preribosome, large subunit precursor, and BAR domain network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4YF28_PHYSP	Uncharacterized protein. (356 aa)
	G4YJ53_PHYSP	Uncharacterized protein. (601 aa)
	G4YPJ4_PHYSP	Uncharacterized protein. (612 aa)
	G4YYS8_PHYSP	Uncharacterized protein. (1141 aa)
	G4Z0N6_PHYSP	Uncharacterized protein. (821 aa)
	G4Z4W9_PHYSP	Uncharacterized protein. (348 aa)
	G4ZL79_PHYSP	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (883 aa)
	G4ZR11_PHYSP	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	G4ZSR2_PHYSP	Brix domain-containing protein. (324 aa)
	G4ZVY9_PHYSP	Uncharacterized protein. (756 aa)
	G4ZWU5_PHYSP	Protein MAK16 homolog; Belongs to the MAK16 family. (259 aa)
	G4ZZY4_PHYSP	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (667 aa)
	G5A136_PHYSP	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (435 aa)
	G5ACH2_PHYSP	Uncharacterized protein. (333 aa)
	G5AF14_PHYSP	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (255 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YF28_PHYSP	G4YJ53_PHYSP	G4YF28	G4YJ53	Uncharacterized protein.	Uncharacterized protein.	0.988
G4YF28_PHYSP	G4YPJ4_PHYSP	G4YF28	G4YPJ4	Uncharacterized protein.	Uncharacterized protein.	0.983
G4YF28_PHYSP	G4YYS8_PHYSP	G4YF28	G4YYS8	Uncharacterized protein.	Uncharacterized protein.	0.984
G4YF28_PHYSP	G4Z0N6_PHYSP	G4YF28	G4Z0N6	Uncharacterized protein.	Uncharacterized protein.	0.961
G4YF28_PHYSP	G4Z4W9_PHYSP	G4YF28	G4Z4W9	Uncharacterized protein.	Uncharacterized protein.	0.930
G4YF28_PHYSP	G4ZL79_PHYSP	G4YF28	G4ZL79	Uncharacterized protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.977
G4YF28_PHYSP	G4ZR11_PHYSP	G4YF28	G4ZR11	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.980
G4YF28_PHYSP	G4ZSR2_PHYSP	G4YF28	G4ZSR2	Uncharacterized protein.	Brix domain-containing protein.	0.956
G4YF28_PHYSP	G4ZVY9_PHYSP	G4YF28	G4ZVY9	Uncharacterized protein.	Uncharacterized protein.	0.982
G4YF28_PHYSP	G4ZWU5_PHYSP	G4YF28	G4ZWU5	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.963
G4YF28_PHYSP	G4ZZY4_PHYSP	G4YF28	G4ZZY4	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.973
G4YF28_PHYSP	G5A136_PHYSP	G4YF28	G5A136	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.985
G4YF28_PHYSP	G5ACH2_PHYSP	G4YF28	G5ACH2	Uncharacterized protein.	Uncharacterized protein.	0.985
G4YF28_PHYSP	G5AF14_PHYSP	G4YF28	G5AF14	Uncharacterized protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.981
G4YJ53_PHYSP	G4YF28_PHYSP	G4YJ53	G4YF28	Uncharacterized protein.	Uncharacterized protein.	0.988
G4YJ53_PHYSP	G4YPJ4_PHYSP	G4YJ53	G4YPJ4	Uncharacterized protein.	Uncharacterized protein.	0.993
G4YJ53_PHYSP	G4YYS8_PHYSP	G4YJ53	G4YYS8	Uncharacterized protein.	Uncharacterized protein.	0.997
G4YJ53_PHYSP	G4Z0N6_PHYSP	G4YJ53	G4Z0N6	Uncharacterized protein.	Uncharacterized protein.	0.976
G4YJ53_PHYSP	G4Z4W9_PHYSP	G4YJ53	G4Z4W9	Uncharacterized protein.	Uncharacterized protein.	0.993
G4YJ53_PHYSP	G4ZL79_PHYSP	G4YJ53	G4ZL79	Uncharacterized protein.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.951