(10 nodes) snRNA processing, and Integrator complex subunit 8 network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4YIN3_PHYSP	Uncharacterized protein. (669 aa)
	G4YNT6_PHYSP	Beta-Casp domain-containing protein. (620 aa)
	G4YYK1_PHYSP	Uncharacterized protein. (257 aa)
	G4YYK2_PHYSP	TPR_REGION domain-containing protein. (408 aa)
	G4ZCG1_PHYSP	Uncharacterized protein. (1539 aa)
	G4ZDD1_PHYSP	Uncharacterized protein. (1002 aa)
	G4ZQR8_PHYSP	Uncharacterized protein. (144 aa)
	G5A156_PHYSP	Uncharacterized protein. (858 aa)
	G5A181_PHYSP	DUF3677 domain-containing protein. (2918 aa)
	G5AIG2_PHYSP	Uncharacterized protein. (528 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YIN3_PHYSP	G4YNT6_PHYSP	G4YIN3	G4YNT6	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.999
G4YIN3_PHYSP	G4YYK1_PHYSP	G4YIN3	G4YYK1	Uncharacterized protein.	Uncharacterized protein.	0.791
G4YIN3_PHYSP	G4YYK2_PHYSP	G4YIN3	G4YYK2	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.791
G4YIN3_PHYSP	G4ZCG1_PHYSP	G4YIN3	G4ZCG1	Uncharacterized protein.	Uncharacterized protein.	0.614
G4YIN3_PHYSP	G4ZDD1_PHYSP	G4YIN3	G4ZDD1	Uncharacterized protein.	Uncharacterized protein.	0.997
G4YIN3_PHYSP	G4ZQR8_PHYSP	G4YIN3	G4ZQR8	Uncharacterized protein.	Uncharacterized protein.	0.803
G4YIN3_PHYSP	G5A156_PHYSP	G4YIN3	G5A156	Uncharacterized protein.	Uncharacterized protein.	0.993
G4YIN3_PHYSP	G5A181_PHYSP	G4YIN3	G5A181	Uncharacterized protein.	DUF3677 domain-containing protein.	0.998
G4YIN3_PHYSP	G5AIG2_PHYSP	G4YIN3	G5AIG2	Uncharacterized protein.	Uncharacterized protein.	0.577
G4YNT6_PHYSP	G4YIN3_PHYSP	G4YNT6	G4YIN3	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.999
G4YNT6_PHYSP	G4YYK1_PHYSP	G4YNT6	G4YYK1	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.771
G4YNT6_PHYSP	G4YYK2_PHYSP	G4YNT6	G4YYK2	Beta-Casp domain-containing protein.	TPR_REGION domain-containing protein.	0.771
G4YNT6_PHYSP	G4ZCG1_PHYSP	G4YNT6	G4ZCG1	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.609
G4YNT6_PHYSP	G4ZDD1_PHYSP	G4YNT6	G4ZDD1	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.997
G4YNT6_PHYSP	G4ZQR8_PHYSP	G4YNT6	G4ZQR8	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.802
G4YNT6_PHYSP	G5A156_PHYSP	G4YNT6	G5A156	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.985
G4YNT6_PHYSP	G5A181_PHYSP	G4YNT6	G5A181	Beta-Casp domain-containing protein.	DUF3677 domain-containing protein.	0.999
G4YNT6_PHYSP	G5AIG2_PHYSP	G4YNT6	G5AIG2	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.713
G4YYK1_PHYSP	G4YIN3_PHYSP	G4YYK1	G4YIN3	Uncharacterized protein.	Uncharacterized protein.	0.791
G4YYK1_PHYSP	G4YNT6_PHYSP	G4YYK1	G4YNT6	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.771