(10 nodes) Mixed, incl. Kelch motif, and Beta-fructofuranosidase activity network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4YIX5_PHYSP	Uncharacterized protein. (834 aa)
	G4YXG6_PHYSP	Uncharacterized protein. (199 aa)
	G4Z004_PHYSP	Uncharacterized protein; Belongs to the SWEET sugar transporter family. (240 aa)
	G4Z0Y9_PHYSP	Uncharacterized protein; Belongs to the SWEET sugar transporter family. (271 aa)
	G4Z8F8_PHYSP	DUF4110 domain-containing protein. (736 aa)
	G4ZF52_PHYSP	Glyco_hydro_32C domain-containing protein. (345 aa)
	G5A3T2_PHYSP	Uncharacterized protein. (83 aa)
	G5A8Y4_PHYSP	Uncharacterized protein; Belongs to the SWEET sugar transporter family. (206 aa)
	G5A903_PHYSP	Uncharacterized protein; Belongs to the SWEET sugar transporter family. (253 aa)
	G5AJG7_PHYSP	Uncharacterized protein. (519 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YIX5_PHYSP	G4Z8F8_PHYSP	G4YIX5	G4Z8F8	Uncharacterized protein.	DUF4110 domain-containing protein.	0.480
G4YXG6_PHYSP	G4Z8F8_PHYSP	G4YXG6	G4Z8F8	Uncharacterized protein.	DUF4110 domain-containing protein.	0.480
G4Z8F8_PHYSP	G4YIX5_PHYSP	G4Z8F8	G4YIX5	DUF4110 domain-containing protein.	Uncharacterized protein.	0.480
G4Z8F8_PHYSP	G4YXG6_PHYSP	G4Z8F8	G4YXG6	DUF4110 domain-containing protein.	Uncharacterized protein.	0.480
G4Z8F8_PHYSP	G4ZF52_PHYSP	G4Z8F8	G4ZF52	DUF4110 domain-containing protein.	Glyco_hydro_32C domain-containing protein.	0.550
G4Z8F8_PHYSP	G5A3T2_PHYSP	G4Z8F8	G5A3T2	DUF4110 domain-containing protein.	Uncharacterized protein.	0.480
G4Z8F8_PHYSP	G5AJG7_PHYSP	G4Z8F8	G5AJG7	DUF4110 domain-containing protein.	Uncharacterized protein.	0.480
G4ZF52_PHYSP	G4Z8F8_PHYSP	G4ZF52	G4Z8F8	Glyco_hydro_32C domain-containing protein.	DUF4110 domain-containing protein.	0.550
G5A3T2_PHYSP	G4Z8F8_PHYSP	G5A3T2	G4Z8F8	Uncharacterized protein.	DUF4110 domain-containing protein.	0.480
G5AJG7_PHYSP	G4Z8F8_PHYSP	G5AJG7	G4Z8F8	Uncharacterized protein.	DUF4110 domain-containing protein.	0.480