(5 nodes) Mixed, incl. Regulation of metal ion transport, and Cilia- and flagella-associated protein 45 network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4YVW8_PHYSP	Uncharacterized protein. (629 aa)
	G4Z3Q5_PHYSP	Uncharacterized protein. (353 aa)
	G4Z4M8_PHYSP	WD_REPEATS_REGION domain-containing protein. (940 aa)
	G5A0U0_PHYSP	Uncharacterized protein. (473 aa)
	G5A766_PHYSP	Enkurin domain-containing protein. (285 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YVW8_PHYSP	G4Z3Q5_PHYSP	G4YVW8	G4Z3Q5	Uncharacterized protein.	Uncharacterized protein.	0.765
G4YVW8_PHYSP	G4Z4M8_PHYSP	G4YVW8	G4Z4M8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.849
G4YVW8_PHYSP	G5A0U0_PHYSP	G4YVW8	G5A0U0	Uncharacterized protein.	Uncharacterized protein.	0.491
G4YVW8_PHYSP	G5A766_PHYSP	G4YVW8	G5A766	Uncharacterized protein.	Enkurin domain-containing protein.	0.819
G4Z3Q5_PHYSP	G4YVW8_PHYSP	G4Z3Q5	G4YVW8	Uncharacterized protein.	Uncharacterized protein.	0.765
G4Z3Q5_PHYSP	G4Z4M8_PHYSP	G4Z3Q5	G4Z4M8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.991
G4Z3Q5_PHYSP	G5A0U0_PHYSP	G4Z3Q5	G5A0U0	Uncharacterized protein.	Uncharacterized protein.	0.818
G4Z3Q5_PHYSP	G5A766_PHYSP	G4Z3Q5	G5A766	Uncharacterized protein.	Enkurin domain-containing protein.	0.846
G4Z4M8_PHYSP	G4YVW8_PHYSP	G4Z4M8	G4YVW8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.849
G4Z4M8_PHYSP	G4Z3Q5_PHYSP	G4Z4M8	G4Z3Q5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.991
G4Z4M8_PHYSP	G5A0U0_PHYSP	G4Z4M8	G5A0U0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.852
G4Z4M8_PHYSP	G5A766_PHYSP	G4Z4M8	G5A766	WD_REPEATS_REGION domain-containing protein.	Enkurin domain-containing protein.	0.854
G5A0U0_PHYSP	G4YVW8_PHYSP	G5A0U0	G4YVW8	Uncharacterized protein.	Uncharacterized protein.	0.491
G5A0U0_PHYSP	G4Z3Q5_PHYSP	G5A0U0	G4Z3Q5	Uncharacterized protein.	Uncharacterized protein.	0.818
G5A0U0_PHYSP	G4Z4M8_PHYSP	G5A0U0	G4Z4M8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.852
G5A0U0_PHYSP	G5A766_PHYSP	G5A0U0	G5A766	Uncharacterized protein.	Enkurin domain-containing protein.	0.831
G5A766_PHYSP	G4YVW8_PHYSP	G5A766	G4YVW8	Enkurin domain-containing protein.	Uncharacterized protein.	0.819
G5A766_PHYSP	G4Z3Q5_PHYSP	G5A766	G4Z3Q5	Enkurin domain-containing protein.	Uncharacterized protein.	0.846
G5A766_PHYSP	G4Z4M8_PHYSP	G5A766	G4Z4M8	Enkurin domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.854
G5A766_PHYSP	G5A0U0_PHYSP	G5A766	G5A0U0	Enkurin domain-containing protein.	Uncharacterized protein.	0.831