(14 nodes) Mixed, incl. WASH complex, and Retromer complex network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4YGZ2_PHYSP	Uncharacterized protein. (2568 aa)
	G4YJH4_PHYSP	Uncharacterized protein. (1544 aa)
	G4YKF1_PHYSP	Uncharacterized protein. (1514 aa)
	G4YUC8_PHYSP	PX domain-containing protein. (454 aa)
	G4YY78_PHYSP	Uncharacterized protein. (306 aa)
	G4YZF6_PHYSP	Uncharacterized protein. (1711 aa)
	G4Z6U9_PHYSP	PX domain-containing protein. (469 aa)
	G4Z6V0_PHYSP	Uncharacterized protein. (829 aa)
	G4Z9G6_PHYSP	Rab-GAP TBC domain-containing protein. (623 aa)
	G4ZDF4_PHYSP	PX domain-containing protein. (557 aa)
	G4ZH15_PHYSP	Uncharacterized protein. (901 aa)
	G4ZQJ9_PHYSP	Uncharacterized protein. (686 aa)
	G4ZXW4_PHYSP	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (848 aa)
	G5A0N0_PHYSP	PX domain-containing protein. (528 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YKF1_PHYSP	G4YZF6_PHYSP	G4YKF1	G4YZF6	Uncharacterized protein.	Uncharacterized protein.	0.949
G4YKF1_PHYSP	G4ZH15_PHYSP	G4YKF1	G4ZH15	Uncharacterized protein.	Uncharacterized protein.	0.717
G4YKF1_PHYSP	G4ZXW4_PHYSP	G4YKF1	G4ZXW4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.529
G4YUC8_PHYSP	G4YY78_PHYSP	G4YUC8	G4YY78	PX domain-containing protein.	Uncharacterized protein.	0.474
G4YUC8_PHYSP	G4ZDF4_PHYSP	G4YUC8	G4ZDF4	PX domain-containing protein.	PX domain-containing protein.	0.900
G4YUC8_PHYSP	G4ZXW4_PHYSP	G4YUC8	G4ZXW4	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.482
G4YUC8_PHYSP	G5A0N0_PHYSP	G4YUC8	G5A0N0	PX domain-containing protein.	PX domain-containing protein.	0.911
G4YY78_PHYSP	G4YUC8_PHYSP	G4YY78	G4YUC8	Uncharacterized protein.	PX domain-containing protein.	0.474
G4YY78_PHYSP	G4Z6U9_PHYSP	G4YY78	G4Z6U9	Uncharacterized protein.	PX domain-containing protein.	0.474
G4YY78_PHYSP	G4Z6V0_PHYSP	G4YY78	G4Z6V0	Uncharacterized protein.	Uncharacterized protein.	0.474
G4YY78_PHYSP	G4Z9G6_PHYSP	G4YY78	G4Z9G6	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.791
G4YY78_PHYSP	G4ZDF4_PHYSP	G4YY78	G4ZDF4	Uncharacterized protein.	PX domain-containing protein.	0.474
G4YY78_PHYSP	G4ZH15_PHYSP	G4YY78	G4ZH15	Uncharacterized protein.	Uncharacterized protein.	0.517
G4YY78_PHYSP	G4ZQJ9_PHYSP	G4YY78	G4ZQJ9	Uncharacterized protein.	Uncharacterized protein.	0.699
G4YY78_PHYSP	G4ZXW4_PHYSP	G4YY78	G4ZXW4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
G4YY78_PHYSP	G5A0N0_PHYSP	G4YY78	G5A0N0	Uncharacterized protein.	PX domain-containing protein.	0.474
G4YZF6_PHYSP	G4YKF1_PHYSP	G4YZF6	G4YKF1	Uncharacterized protein.	Uncharacterized protein.	0.949
G4YZF6_PHYSP	G4ZH15_PHYSP	G4YZF6	G4ZH15	Uncharacterized protein.	Uncharacterized protein.	0.715
G4YZF6_PHYSP	G4ZXW4_PHYSP	G4YZF6	G4ZXW4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.439
G4Z6U9_PHYSP	G4YY78_PHYSP	G4Z6U9	G4YY78	PX domain-containing protein.	Uncharacterized protein.	0.474