(18 nodes) Programmed cell death network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4ZQF6_PHYSP	Uncharacterized protein. (561 aa)
	G4ZKX9_PHYSP	Uncharacterized protein. (110 aa)
	G4ZKC5_PHYSP	Uncharacterized protein. (367 aa)
	G4YTY0_PHYSP	Uncharacterized protein. (195 aa)
	G4YW04_PHYSP	Uncharacterized protein. (109 aa)
	G4ZD43_PHYSP	Uncharacterized protein. (449 aa)
	G4ZCA1_PHYSP	DUF4203 domain-containing protein. (275 aa)
	G4Z6P8_PHYSP	Uncharacterized protein. (430 aa)
	G4Z6B7_PHYSP	Uncharacterized protein. (968 aa)
	G4Z578_PHYSP	TMF_TATA_bd domain-containing protein. (131 aa)
	G4Z577_PHYSP	Uncharacterized protein. (615 aa)
	G4YM56_PHYSP	Endonuclease_NS domain-containing protein. (177 aa)
	G4ZQK1_PHYSP	Uncharacterized protein. (730 aa)
	G4YM60_PHYSP	Uncharacterized protein. (355 aa)
	G4ZIG1_PHYSP	Uncharacterized protein. (199 aa)
	G4YF95_PHYSP	PDZ domain-containing protein. (1012 aa)
	G4YM57_PHYSP	Uncharacterized protein. (169 aa)
	G5ABJ8_PHYSP	Uncharacterized protein. (2211 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YM56_PHYSP	G4YM57_PHYSP	G4YM56	G4YM57	Endonuclease_NS domain-containing protein.	Uncharacterized protein.	0.718
G4YM56_PHYSP	G4ZQF6_PHYSP	G4YM56	G4ZQF6	Endonuclease_NS domain-containing protein.	Uncharacterized protein.	0.548
G4YM57_PHYSP	G4YM56_PHYSP	G4YM57	G4YM56	Uncharacterized protein.	Endonuclease_NS domain-containing protein.	0.718
G4YM57_PHYSP	G4ZQF6_PHYSP	G4YM57	G4ZQF6	Uncharacterized protein.	Uncharacterized protein.	0.548
G4YM60_PHYSP	G4ZQF6_PHYSP	G4YM60	G4ZQF6	Uncharacterized protein.	Uncharacterized protein.	0.548
G4ZQF6_PHYSP	G4YM56_PHYSP	G4ZQF6	G4YM56	Uncharacterized protein.	Endonuclease_NS domain-containing protein.	0.548
G4ZQF6_PHYSP	G4YM57_PHYSP	G4ZQF6	G4YM57	Uncharacterized protein.	Uncharacterized protein.	0.548
G4ZQF6_PHYSP	G4YM60_PHYSP	G4ZQF6	G4YM60	Uncharacterized protein.	Uncharacterized protein.	0.548