(10 nodes) Cell migration network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4Z771_PHYSP	Uncharacterized protein. (995 aa)
	G4YXC0_PHYSP	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family. (1338 aa)
	G4YXB6_PHYSP	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family. (1374 aa)
	G4YWG4_PHYSP	Uncharacterized protein. (287 aa)
	G4YPR5_PHYSP	Uncharacterized protein. (1020 aa)
	G5AF24_PHYSP	Uncharacterized protein. (144 aa)
	G5AAU7_PHYSP	Uncharacterized protein. (338 aa)
	G4ZNA6_PHYSP	Uncharacterized protein. (230 aa)
	G4ZNA5_PHYSP	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family. (876 aa)
	G4Z7E9_PHYSP	Uncharacterized protein. (1118 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YXB6_PHYSP	G4YXC0_PHYSP	G4YXB6	G4YXC0	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	0.901
G4YXB6_PHYSP	G4ZNA5_PHYSP	G4YXB6	G4ZNA5	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	0.912
G4YXC0_PHYSP	G4YXB6_PHYSP	G4YXC0	G4YXB6	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	0.901
G4YXC0_PHYSP	G4ZNA5_PHYSP	G4YXC0	G4ZNA5	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	0.912
G4ZNA5_PHYSP	G4YXB6_PHYSP	G4ZNA5	G4YXB6	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	0.912
G4ZNA5_PHYSP	G4YXC0_PHYSP	G4ZNA5	G4YXC0	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3 and 4-kinase-like protein; Belongs to the PI3/PI4-kinase family.	0.912