(8 nodes) Protein import into peroxisome matrix network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4YT74_PHYSP	TPR_REGION domain-containing protein. (673 aa)
	G5A3S2_PHYSP	Uncharacterized protein. (320 aa)
	G5A3Z0_PHYSP	Uncharacterized protein. (1106 aa)
	G5A7G1_PHYSP	Uncharacterized protein. (894 aa)
	G5ACU6_PHYSP	AAA domain-containing protein. (152 aa)
	G4ZRW8_PHYSP	Uncharacterized protein. (473 aa)
	G5A3D8_PHYSP	RING-type domain-containing protein. (187 aa)
	G4ZAJ0_PHYSP	Uncharacterized protein. (865 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YT74_PHYSP	G4ZRW8_PHYSP	G4YT74	G4ZRW8	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.995
G4YT74_PHYSP	G5A3D8_PHYSP	G4YT74	G5A3D8	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.867
G4YT74_PHYSP	G5A3Z0_PHYSP	G4YT74	G5A3Z0	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.720
G4YT74_PHYSP	G5A7G1_PHYSP	G4YT74	G5A7G1	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.860
G4YT74_PHYSP	G5ACU6_PHYSP	G4YT74	G5ACU6	TPR_REGION domain-containing protein.	AAA domain-containing protein.	0.720
G4ZAJ0_PHYSP	G4ZRW8_PHYSP	G4ZAJ0	G4ZRW8	Uncharacterized protein.	Uncharacterized protein.	0.958
G4ZAJ0_PHYSP	G5A3D8_PHYSP	G4ZAJ0	G5A3D8	Uncharacterized protein.	RING-type domain-containing protein.	0.867
G4ZAJ0_PHYSP	G5A3Z0_PHYSP	G4ZAJ0	G5A3Z0	Uncharacterized protein.	Uncharacterized protein.	0.720
G4ZAJ0_PHYSP	G5A7G1_PHYSP	G4ZAJ0	G5A7G1	Uncharacterized protein.	Uncharacterized protein.	0.860
G4ZAJ0_PHYSP	G5ACU6_PHYSP	G4ZAJ0	G5ACU6	Uncharacterized protein.	AAA domain-containing protein.	0.720
G4ZRW8_PHYSP	G4YT74_PHYSP	G4ZRW8	G4YT74	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.995
G4ZRW8_PHYSP	G4ZAJ0_PHYSP	G4ZRW8	G4ZAJ0	Uncharacterized protein.	Uncharacterized protein.	0.958
G4ZRW8_PHYSP	G5A3D8_PHYSP	G4ZRW8	G5A3D8	Uncharacterized protein.	RING-type domain-containing protein.	0.875
G4ZRW8_PHYSP	G5A3S2_PHYSP	G4ZRW8	G5A3S2	Uncharacterized protein.	Uncharacterized protein.	0.507
G4ZRW8_PHYSP	G5A3Z0_PHYSP	G4ZRW8	G5A3Z0	Uncharacterized protein.	Uncharacterized protein.	0.621
G4ZRW8_PHYSP	G5A7G1_PHYSP	G4ZRW8	G5A7G1	Uncharacterized protein.	Uncharacterized protein.	0.793
G4ZRW8_PHYSP	G5ACU6_PHYSP	G4ZRW8	G5ACU6	Uncharacterized protein.	AAA domain-containing protein.	0.621
G5A3D8_PHYSP	G4YT74_PHYSP	G5A3D8	G4YT74	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.867
G5A3D8_PHYSP	G4ZAJ0_PHYSP	G5A3D8	G4ZAJ0	RING-type domain-containing protein.	Uncharacterized protein.	0.867
G5A3D8_PHYSP	G4ZRW8_PHYSP	G5A3D8	G4ZRW8	RING-type domain-containing protein.	Uncharacterized protein.	0.875