(10 nodes) HOPS complex network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4ZGI2_PHYSP	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (632 aa)
	G5ABZ7_PHYSP	Uncharacterized protein. (1914 aa)
	G5A443_PHYSP	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (515 aa)
	G5A3X7_PHYSP	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (595 aa)
	G4ZZ75_PHYSP	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (628 aa)
	G4ZUX8_PHYSP	RING-type domain-containing protein. (1050 aa)
	G4ZNC0_PHYSP	Vps16_C domain-containing protein. (401 aa)
	G4ZMM7_PHYSP	Pep3_Vps18 domain-containing protein. (1069 aa)
	G4ZDI2_PHYSP	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family. (1010 aa)
	G4Z679_PHYSP	WD_REPEATS_REGION domain-containing protein. (1765 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4Z679_PHYSP	G4ZDI2_PHYSP	G4Z679	G4ZDI2	WD_REPEATS_REGION domain-containing protein.	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	0.987
G4Z679_PHYSP	G4ZGI2_PHYSP	G4Z679	G4ZGI2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.831
G4Z679_PHYSP	G4ZMM7_PHYSP	G4Z679	G4ZMM7	WD_REPEATS_REGION domain-containing protein.	Pep3_Vps18 domain-containing protein.	0.987
G4Z679_PHYSP	G4ZNC0_PHYSP	G4Z679	G4ZNC0	WD_REPEATS_REGION domain-containing protein.	Vps16_C domain-containing protein.	0.897
G4Z679_PHYSP	G4ZUX8_PHYSP	G4Z679	G4ZUX8	WD_REPEATS_REGION domain-containing protein.	RING-type domain-containing protein.	0.618
G4Z679_PHYSP	G4ZZ75_PHYSP	G4Z679	G4ZZ75	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.831
G4Z679_PHYSP	G5A3X7_PHYSP	G4Z679	G5A3X7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.831
G4Z679_PHYSP	G5A443_PHYSP	G4Z679	G5A443	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.831
G4Z679_PHYSP	G5ABZ7_PHYSP	G4Z679	G5ABZ7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.897
G4ZDI2_PHYSP	G4Z679_PHYSP	G4ZDI2	G4Z679	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	WD_REPEATS_REGION domain-containing protein.	0.987
G4ZDI2_PHYSP	G4ZGI2_PHYSP	G4ZDI2	G4ZGI2	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.867
G4ZDI2_PHYSP	G4ZMM7_PHYSP	G4ZDI2	G4ZMM7	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Pep3_Vps18 domain-containing protein.	0.992
G4ZDI2_PHYSP	G4ZNC0_PHYSP	G4ZDI2	G4ZNC0	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Vps16_C domain-containing protein.	0.933
G4ZDI2_PHYSP	G4ZUX8_PHYSP	G4ZDI2	G4ZUX8	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	RING-type domain-containing protein.	0.992
G4ZDI2_PHYSP	G4ZZ75_PHYSP	G4ZDI2	G4ZZ75	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.867
G4ZDI2_PHYSP	G5A3X7_PHYSP	G4ZDI2	G5A3X7	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.867
G4ZDI2_PHYSP	G5A443_PHYSP	G4ZDI2	G5A443	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.867
G4ZDI2_PHYSP	G5ABZ7_PHYSP	G4ZDI2	G5ABZ7	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	Uncharacterized protein.	0.933
G4ZGI2_PHYSP	G4Z679_PHYSP	G4ZGI2	G4Z679	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	WD_REPEATS_REGION domain-containing protein.	0.831
G4ZGI2_PHYSP	G4ZDI2_PHYSP	G4ZGI2	G4ZDI2	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.	0.867