(115 nodes) Negative regulation of nucleobase-containing compound metabolic process network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4YPE2_PHYSP	Uncharacterized protein. (534 aa)
	G4YQK8_PHYSP	Uncharacterized protein. (246 aa)
	G4YR92_PHYSP	Chromo domain-containing protein. (286 aa)
	G4YR97_PHYSP	Uncharacterized protein. (112 aa)
	G4YSR2_PHYSP	Uncharacterized protein. (881 aa)
	G4YSZ3_PHYSP	HDAC_interact domain-containing protein. (1632 aa)
	G4YU10_PHYSP	Hist_deacetyl domain-containing protein. (395 aa)
	G4YU39_PHYSP	Uncharacterized protein. (94 aa)
	G4YU69_PHYSP	PHD-type domain-containing protein. (528 aa)
	G4YU70_PHYSP	Uncharacterized protein. (362 aa)
	G4YUE1_PHYSP	Uncharacterized protein. (94 aa)
	G4YUE3_PHYSP	Uncharacterized protein. (779 aa)
	G5AJF6_PHYSP	Uncharacterized protein. (156 aa)
	G5AJ67_PHYSP	Uncharacterized protein. (126 aa)
	G5AJ20_PHYSP	Uncharacterized protein. (165 aa)
	G5AIZ5_PHYSP	Uncharacterized protein. (434 aa)
	G5AHJ0_PHYSP	Uncharacterized protein. (73 aa)
	G5AFM7_PHYSP	Uncharacterized protein. (559 aa)
	G5AF17_PHYSP	Uncharacterized protein. (561 aa)
	G5AEU4_PHYSP	RING-type domain-containing protein. (839 aa)
	G5ADF3_PHYSP	Hist_deacetyl domain-containing protein. (739 aa)
	G5AD88_PHYSP	Uncharacterized protein. (168 aa)
	G5AC51_PHYSP	Uncharacterized protein. (407 aa)
	G5AC20_PHYSP	Uncharacterized protein. (244 aa)
	G5AC17_PHYSP	Uncharacterized protein. (127 aa)
	G5AC14_PHYSP	Uncharacterized protein. (244 aa)
	G5ABZ8_PHYSP	Uncharacterized protein. (191 aa)
	G5ABX9_PHYSP	Uncharacterized protein. (127 aa)
	G5ABX7_PHYSP	RNA_GG_bind domain-containing protein. (254 aa)
	G5ABW2_PHYSP	Uncharacterized protein. (316 aa)
	G5ABT4_PHYSP	Uncharacterized protein. (312 aa)
	G5ABS7_PHYSP	Uncharacterized protein. (278 aa)
	G5ABR2_PHYSP	Uncharacterized protein. (494 aa)
	G5ABQ8_PHYSP	Uncharacterized protein. (155 aa)
	G5ABQ4_PHYSP	Uncharacterized protein. (235 aa)
	G5ABM8_PHYSP	Uncharacterized protein. (71 aa)
	G5ABJ9_PHYSP	Uncharacterized protein. (131 aa)
	G5AAU7_PHYSP	Uncharacterized protein. (338 aa)
	G5A6V5_PHYSP	Uncharacterized protein. (560 aa)
	G5A5F8_PHYSP	DUF4201 domain-containing protein. (275 aa)
	G5A4Q1_PHYSP	Chromo domain-containing protein. (85 aa)
	G5A4E5_PHYSP	Chromo domain-containing protein. (309 aa)
	G5A414_PHYSP	Uncharacterized protein. (247 aa)
	G5A413_PHYSP	Uncharacterized protein. (296 aa)
	G5A3Z4_PHYSP	CBFD_NFYB_HMF domain-containing protein. (66 aa)
	G5A3A2_PHYSP	Uncharacterized protein. (162 aa)
	G5A2L0_PHYSP	Uncharacterized protein. (195 aa)
	G5A2J6_PHYSP	Uncharacterized protein. (532 aa)
	G5A2I8_PHYSP	U-box domain-containing protein. (566 aa)
	G5A234_PHYSP	Uncharacterized protein. (123 aa)
	G5A0B4_PHYSP	Hist_deacetyl domain-containing protein. (365 aa)
	G4ZZQ0_PHYSP	Uncharacterized protein. (214 aa)
	G4ZZP9_PHYSP	Uncharacterized protein. (229 aa)
	G4ZY64_PHYSP	TIMELESS domain-containing protein. (1217 aa)
	G4ZXE1_PHYSP	BTP domain-containing protein. (329 aa)
	G4ZX35_PHYSP	Uncharacterized protein. (542 aa)
	G4ZX34_PHYSP	Uncharacterized protein. (338 aa)
	G4ZWK5_PHYSP	Uncharacterized protein. (2325 aa)
	G4ZW79_PHYSP	Uncharacterized protein. (488 aa)
	G4ZW65_PHYSP	Uncharacterized protein. (808 aa)
	G4ZVV7_PHYSP	Uncharacterized protein. (195 aa)
	G4ZVQ4_PHYSP	Swi3 domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (168 aa)
	G4ZU89_PHYSP	Uncharacterized protein. (127 aa)
	G4ZU88_PHYSP	Uncharacterized protein. (174 aa)
	G4ZQS8_PHYSP	Uncharacterized protein. (272 aa)
	G4ZQI6_PHYSP	Deacetylase sirtuin-type domain-containing protein. (387 aa)
	G4ZP83_PHYSP	Uncharacterized protein. (1392 aa)
	G4ZNF8_PHYSP	Uncharacterized protein. (558 aa)
	G4ZN84_PHYSP	Uncharacterized protein. (423 aa)
	G4ZN61_PHYSP	Uncharacterized protein. (73 aa)
	G4ZN16_PHYSP	Hist_deacetyl domain-containing protein. (866 aa)
	G4ZMG5_PHYSP	Chromo domain-containing protein. (66 aa)
	G4ZLD3_PHYSP	Uncharacterized protein. (537 aa)
	G4ZL18_PHYSP	Uncharacterized protein. (116 aa)
	G4ZKU1_PHYSP	Uncharacterized protein. (92 aa)
	G4ZKS9_PHYSP	Uncharacterized protein. (117 aa)
	G4ZKR6_PHYSP	Uncharacterized protein. (92 aa)
	G4ZKM4_PHYSP	Uncharacterized protein. (287 aa)
	G4ZKC0_PHYSP	zf-LYAR domain-containing protein. (258 aa)
	G4ZIE3_PHYSP	Homeobox and zinc-finger domain-containing protein. (1223 aa)
	G4ZHX6_PHYSP	Uncharacterized protein. (541 aa)
	G4ZGG9_PHYSP	RING-type domain-containing protein. (407 aa)
	G4ZG47_PHYSP	C2H2-type domain-containing protein. (188 aa)
	G4ZF20_PHYSP	PHD domain-containing protein. (288 aa)
	G4ZD94_PHYSP	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (453 aa)
	G4ZD06_PHYSP	SANT domain-containing protein. (491 aa)
	G4ZD03_PHYSP	Uncharacterized protein. (117 aa)
	G4ZBA3_PHYSP	Uncharacterized protein. (307 aa)
	G4ZAH0_PHYSP	Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase. (485 aa)
	G4ZA03_PHYSP	Uncharacterized protein. (575 aa)
	G4Z9V6_PHYSP	Uncharacterized protein. (144 aa)
	G4Z7S2_PHYSP	Uncharacterized protein. (60 aa)
	G4Z4S8_PHYSP	Uncharacterized protein. (331 aa)
	G4Z423_PHYSP	Uncharacterized protein. (57 aa)
	G4Z181_PHYSP	Uncharacterized protein. (95 aa)
	G4YZ27_PHYSP	Uncharacterized protein. (457 aa)
	G4YYN4_PHYSP	PHD domain-containing protein. (1094 aa)
	G4YY47_PHYSP	Chromo domain-containing protein. (70 aa)
	G4YXS9_PHYSP	PB1 domain-containing protein. (289 aa)
	G4YXB0_PHYSP	PB1 domain-containing protein. (323 aa)
	G4YVQ6_PHYSP	Uncharacterized protein. (124 aa)
	G4YV64_PHYSP	Uncharacterized protein. (564 aa)
	G4YDX3_PHYSP	Uncharacterized protein. (128 aa)
	G4YEZ3_PHYSP	Uncharacterized protein. (534 aa)
	G4YG52_PHYSP	Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase. (550 aa)
	G4YGJ5_PHYSP	Uncharacterized protein. (175 aa)
	G4YH22_PHYSP	Uncharacterized protein. (287 aa)
	G4YH93_PHYSP	MAGE domain-containing protein. (293 aa)
	G4YIH1_PHYSP	Uncharacterized protein. (171 aa)
	G4YIV6_PHYSP	Uncharacterized protein. (364 aa)
	G4YJC0_PHYSP	Uncharacterized protein. (415 aa)
	G4YJT6_PHYSP	Uncharacterized protein. (714 aa)
	G4YMW3_PHYSP	Uncharacterized protein. (388 aa)
	G4YNP5_PHYSP	Uncharacterized protein. (102 aa)
	G4YQD0_PHYSP	Chromo domain-containing protein. (454 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YGJ5_PHYSP	G4ZGG9_PHYSP	G4YGJ5	G4ZGG9	Uncharacterized protein.	RING-type domain-containing protein.	0.523
G4YH22_PHYSP	G4YJT6_PHYSP	G4YH22	G4YJT6	Uncharacterized protein.	Uncharacterized protein.	0.446
G4YH22_PHYSP	G4YU70_PHYSP	G4YH22	G4YU70	Uncharacterized protein.	Uncharacterized protein.	0.421
G4YH22_PHYSP	G4YYN4_PHYSP	G4YH22	G4YYN4	Uncharacterized protein.	PHD domain-containing protein.	0.472
G4YH22_PHYSP	G4ZD94_PHYSP	G4YH22	G4ZD94	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.447
G4YIH1_PHYSP	G4YJT6_PHYSP	G4YIH1	G4YJT6	Uncharacterized protein.	Uncharacterized protein.	0.446
G4YIH1_PHYSP	G4YU70_PHYSP	G4YIH1	G4YU70	Uncharacterized protein.	Uncharacterized protein.	0.421
G4YIH1_PHYSP	G4YYN4_PHYSP	G4YIH1	G4YYN4	Uncharacterized protein.	PHD domain-containing protein.	0.472
G4YIH1_PHYSP	G4ZD94_PHYSP	G4YIH1	G4ZD94	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.447
G4YIV6_PHYSP	G4YJT6_PHYSP	G4YIV6	G4YJT6	Uncharacterized protein.	Uncharacterized protein.	0.446
G4YIV6_PHYSP	G4YU70_PHYSP	G4YIV6	G4YU70	Uncharacterized protein.	Uncharacterized protein.	0.421
G4YIV6_PHYSP	G4YYN4_PHYSP	G4YIV6	G4YYN4	Uncharacterized protein.	PHD domain-containing protein.	0.472
G4YIV6_PHYSP	G4ZD94_PHYSP	G4YIV6	G4ZD94	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.447
G4YJT6_PHYSP	G4YH22_PHYSP	G4YJT6	G4YH22	Uncharacterized protein.	Uncharacterized protein.	0.446
G4YJT6_PHYSP	G4YIH1_PHYSP	G4YJT6	G4YIH1	Uncharacterized protein.	Uncharacterized protein.	0.446
G4YJT6_PHYSP	G4YIV6_PHYSP	G4YJT6	G4YIV6	Uncharacterized protein.	Uncharacterized protein.	0.446
G4YJT6_PHYSP	G4YPE2_PHYSP	G4YJT6	G4YPE2	Uncharacterized protein.	Uncharacterized protein.	0.446
G4YJT6_PHYSP	G4YSR2_PHYSP	G4YJT6	G4YSR2	Uncharacterized protein.	Uncharacterized protein.	0.446
G4YJT6_PHYSP	G4YU10_PHYSP	G4YJT6	G4YU10	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.446
G4YJT6_PHYSP	G4YUE3_PHYSP	G4YJT6	G4YUE3	Uncharacterized protein.	Uncharacterized protein.	0.446