(86 nodes) Positive regulation of nucleobase-containing compound metabolic process network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4Z4V1_PHYSP	Uncharacterized protein. (391 aa)
	G4YEZ1_PHYSP	Uncharacterized protein. (2377 aa)
	MED20	Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (196 aa)
	G4YG85_PHYSP	RPOL4c domain-containing protein. (155 aa)
	G4YIC8_PHYSP	BZIP domain-containing protein. (669 aa)
	G4YJ63_PHYSP	CBFD_NFYB_HMF domain-containing protein. (123 aa)
	G4YJ67_PHYSP	Endo/exonuclease/phosphatase domain-containing protein. (311 aa)
	G4YLL1_PHYSP	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (431 aa)
	G4YM90_PHYSP	Nudix hydrolase domain-containing protein. (429 aa)
	G4YN83_PHYSP	Uncharacterized protein. (330 aa)
	G4YN84_PHYSP	Uncharacterized protein. (456 aa)
	G4YNH8_PHYSP	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (488 aa)
	G4YNJ2_PHYSP	Uncharacterized protein. (263 aa)
	G4YS21_PHYSP	mRNA_decap_C domain-containing protein. (333 aa)
	G4YTH3_PHYSP	Putative transcription protein. (126 aa)
	G4YTS9_PHYSP	PEROXIDASE_4 domain-containing protein. (825 aa)
	G4YU69_PHYSP	PHD-type domain-containing protein. (528 aa)
	G4YWT3_PHYSP	Uncharacterized protein. (1538 aa)
	G4YY60_PHYSP	PITH domain-containing protein. (219 aa)
	G4YYI8_PHYSP	ARID domain-containing protein. (677 aa)
	G4YYN4_PHYSP	PHD domain-containing protein. (1094 aa)
	G4YYW7_PHYSP	Endo/exonuclease/phosphatase domain-containing protein. (341 aa)
	G4YYW9_PHYSP	Endo/exonuclease/phosphatase domain-containing protein. (321 aa)
	G4YYX0_PHYSP	Endo/exonuclease/phosphatase domain-containing protein. (299 aa)
	G4YYZ1_PHYSP	Endo/exonuclease/phosphatase domain-containing protein. (437 aa)
	G4Z0M4_PHYSP	Uncharacterized protein. (268 aa)
	G4Z0M5_PHYSP	MADS-box domain-containing protein. (448 aa)
	G4Z0S8_PHYSP	Uncharacterized protein. (409 aa)
	G4Z1G4_PHYSP	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (326 aa)
	G4Z398_PHYSP	Uncharacterized protein. (1227 aa)
	G4Z423_PHYSP	Uncharacterized protein. (57 aa)
	G4Z577_PHYSP	Uncharacterized protein. (615 aa)
	G4Z578_PHYSP	TMF_TATA_bd domain-containing protein. (131 aa)
	G4Z5P2_PHYSP	Uncharacterized protein. (1043 aa)
	G4Z600_PHYSP	Uncharacterized protein. (295 aa)
	G4Z6Y1_PHYSP	YTH domain-containing protein. (222 aa)
	G4Z8V3_PHYSP	Uncharacterized protein. (1025 aa)
	G4ZAR7_PHYSP	Uncharacterized protein. (91 aa)
	G4ZB94_PHYSP	Uncharacterized protein. (612 aa)
	G4ZCF5_PHYSP	Uncharacterized protein. (643 aa)
	G4ZCG7_PHYSP	Peptidase S74 domain-containing protein. (449 aa)
	G4ZD94_PHYSP	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (453 aa)
	G4ZDF6_PHYSP	Uncharacterized protein. (279 aa)
	G4ZEN7_PHYSP	Uncharacterized protein. (1018 aa)
	G4ZF20_PHYSP	PHD domain-containing protein. (288 aa)
	G4ZFL2_PHYSP	Uncharacterized protein. (517 aa)
	G4ZG34_PHYSP	CDC73_C domain-containing protein. (325 aa)
	G4ZIG1_PHYSP	Uncharacterized protein. (199 aa)
	G4ZIM0_PHYSP	Uncharacterized protein. (189 aa)
	G4ZIZ2_PHYSP	Helicase ATP-binding domain-containing protein. (791 aa)
	G4ZLI0_PHYSP	Endo/exonuclease/phosphatase domain-containing protein. (589 aa)
	G4ZM44_PHYSP	Uncharacterized protein. (292 aa)
	G4ZM47_PHYSP	Uncharacterized protein. (161 aa)
	G4ZM57_PHYSP	Guanylate cyclase domain-containing protein. (881 aa)
	G4ZNY8_PHYSP	EAF domain-containing protein. (220 aa)
	G4ZP80_PHYSP	Uncharacterized protein. (332 aa)
	G4ZQB0_PHYSP	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (111 aa)
	G4ZQE0_PHYSP	Uncharacterized protein. (1171 aa)
	G4ZRM9_PHYSP	Uncharacterized protein. (119 aa)
	G4ZRQ4_PHYSP	S1 domain-containing protein. (330 aa)
	G4ZRZ9_PHYSP	Cyclin N-terminal domain-containing protein. (385 aa)
	G4ZS96_PHYSP	Fibronectin type-III domain-containing protein. (608 aa)
	G4ZSB0_PHYSP	WD_REPEATS_REGION domain-containing protein. (863 aa)
	G4ZSR0_PHYSP	CYCLIN domain-containing protein; Belongs to the cyclin family. (271 aa)
	G4ZSZ5_PHYSP	HTH cro/C1-type domain-containing protein. (150 aa)
	G4ZU77_PHYSP	Sm domain-containing protein. (434 aa)
	G4ZU86_PHYSP	Uncharacterized protein. (372 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (122 aa)
	G4ZVG6_PHYSP	Uncharacterized protein. (418 aa)
	G4ZVW0_PHYSP	Cyclin N-terminal domain-containing protein. (393 aa)
	G4ZXE1_PHYSP	BTP domain-containing protein. (329 aa)
	G4ZYP8_PHYSP	SH2 domain-containing protein. (978 aa)
	G4ZZH8_PHYSP	Cyclin N-terminal domain-containing protein. (796 aa)
	G5A2J6_PHYSP	Uncharacterized protein. (532 aa)
	G5A3Z4_PHYSP	CBFD_NFYB_HMF domain-containing protein. (66 aa)
	G5A5Y3_PHYSP	Uncharacterized protein. (151 aa)
	G5AAU7_PHYSP	Uncharacterized protein. (338 aa)
	G5AAV8_PHYSP	Uncharacterized protein. (283 aa)
	G5ADP0_PHYSP	Uncharacterized protein. (741 aa)
	G5AE15_PHYSP	Uncharacterized protein. (201 aa)
	G5AE16_PHYSP	CBFD_NFYB_HMF domain-containing protein. (130 aa)
	G5AEV5_PHYSP	WD_REPEATS_REGION domain-containing protein. (514 aa)
	G5AEX9_PHYSP	Uncharacterized protein. (700 aa)
	G5AEY9_PHYSP	TAF domain-containing protein. (436 aa)
	G5AGF3_PHYSP	Transcriptional adapter. (554 aa)
	G5AIJ2_PHYSP	Protein kinase domain-containing protein. (847 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YEZ1_PHYSP	G4YJ67_PHYSP	G4YEZ1	G4YJ67	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.708
G4YEZ1_PHYSP	G4YM90_PHYSP	G4YEZ1	G4YM90	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.497
G4YEZ1_PHYSP	G4YNJ2_PHYSP	G4YEZ1	G4YNJ2	Uncharacterized protein.	Uncharacterized protein.	0.996
G4YEZ1_PHYSP	G4YS21_PHYSP	G4YEZ1	G4YS21	Uncharacterized protein.	mRNA_decap_C domain-containing protein.	0.518
G4YEZ1_PHYSP	G4YYW7_PHYSP	G4YEZ1	G4YYW7	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.708
G4YEZ1_PHYSP	G4YYW9_PHYSP	G4YEZ1	G4YYW9	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.708
G4YEZ1_PHYSP	G4YYX0_PHYSP	G4YEZ1	G4YYX0	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.708
G4YEZ1_PHYSP	G4YYZ1_PHYSP	G4YEZ1	G4YYZ1	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.708
G4YEZ1_PHYSP	G4Z398_PHYSP	G4YEZ1	G4Z398	Uncharacterized protein.	Uncharacterized protein.	0.708
G4YEZ1_PHYSP	G4Z6Y1_PHYSP	G4YEZ1	G4Z6Y1	Uncharacterized protein.	YTH domain-containing protein.	0.468
G4YEZ1_PHYSP	G4ZB94_PHYSP	G4YEZ1	G4ZB94	Uncharacterized protein.	Uncharacterized protein.	0.972
G4YEZ1_PHYSP	G4ZLI0_PHYSP	G4YEZ1	G4ZLI0	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.708
G4YEZ1_PHYSP	G4ZS96_PHYSP	G4YEZ1	G4ZS96	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.708
G4YEZ1_PHYSP	G5AEX9_PHYSP	G4YEZ1	G5AEX9	Uncharacterized protein.	Uncharacterized protein.	0.958
G4YEZ1_PHYSP	LSM1	G4YEZ1	G4ZUD1	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.495
G4YG85_PHYSP	G4YLL1_PHYSP	G4YG85	G4YLL1	RPOL4c domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.612
G4YG85_PHYSP	G4YNH8_PHYSP	G4YG85	G4YNH8	RPOL4c domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.990
G4YG85_PHYSP	G4YTH3_PHYSP	G4YG85	G4YTH3	RPOL4c domain-containing protein.	Putative transcription protein.	0.995
G4YG85_PHYSP	G4YWT3_PHYSP	G4YG85	G4YWT3	RPOL4c domain-containing protein.	Uncharacterized protein.	0.950
G4YG85_PHYSP	G4Z1G4_PHYSP	G4YG85	G4Z1G4	RPOL4c domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.612