(8 nodes) Chromosome separation network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G5A917_PHYSP	Uncharacterized protein. (668 aa)
	G5A715_PHYSP	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (382 aa)
	G5A079_PHYSP	ERCC4 domain-containing protein. (581 aa)
	G4YFA9_PHYSP	Uncharacterized protein. (817 aa)
	G4Z791_PHYSP	Protein kinase domain-containing protein. (835 aa)
	G4Z323_PHYSP	Uncharacterized protein. (890 aa)
	G4YZW4_PHYSP	ERCC4 domain-containing protein. (974 aa)
	G4YFB0_PHYSP	Uncharacterized protein. (172 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YFA9_PHYSP	G4Z791_PHYSP	G4YFA9	G4Z791	Uncharacterized protein.	Protein kinase domain-containing protein.	0.664
G4YFA9_PHYSP	G5A715_PHYSP	G4YFA9	G5A715	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.664
G4YFB0_PHYSP	G4Z791_PHYSP	G4YFB0	G4Z791	Uncharacterized protein.	Protein kinase domain-containing protein.	0.664
G4YFB0_PHYSP	G5A715_PHYSP	G4YFB0	G5A715	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.664
G4YZW4_PHYSP	G4Z323_PHYSP	G4YZW4	G4Z323	ERCC4 domain-containing protein.	Uncharacterized protein.	0.685
G4YZW4_PHYSP	G5A079_PHYSP	G4YZW4	G5A079	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.794
G4Z323_PHYSP	G4YZW4_PHYSP	G4Z323	G4YZW4	Uncharacterized protein.	ERCC4 domain-containing protein.	0.685
G4Z323_PHYSP	G4Z791_PHYSP	G4Z323	G4Z791	Uncharacterized protein.	Protein kinase domain-containing protein.	0.445
G4Z323_PHYSP	G5A079_PHYSP	G4Z323	G5A079	Uncharacterized protein.	ERCC4 domain-containing protein.	0.999
G4Z323_PHYSP	G5A715_PHYSP	G4Z323	G5A715	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.445
G4Z791_PHYSP	G4YFA9_PHYSP	G4Z791	G4YFA9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.664
G4Z791_PHYSP	G4YFB0_PHYSP	G4Z791	G4YFB0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.664
G4Z791_PHYSP	G4Z323_PHYSP	G4Z791	G4Z323	Protein kinase domain-containing protein.	Uncharacterized protein.	0.445
G5A079_PHYSP	G4YZW4_PHYSP	G5A079	G4YZW4	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.794
G5A079_PHYSP	G4Z323_PHYSP	G5A079	G4Z323	ERCC4 domain-containing protein.	Uncharacterized protein.	0.999
G5A715_PHYSP	G4YFA9_PHYSP	G5A715	G4YFA9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.664
G5A715_PHYSP	G4YFB0_PHYSP	G5A715	G4YFB0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.664
G5A715_PHYSP	G4Z323_PHYSP	G5A715	G4Z323	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.445