(22 nodes) 90S preribosome network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G5ACH0_PHYSP	Pectate lyase. (277 aa)
	G4YJP4_PHYSP	CBF domain-containing protein. (144 aa)
	G4YNZ0_PHYSP	Uncharacterized protein. (113 aa)
	G4YNZ1_PHYSP	Uncharacterized protein. (344 aa)
	G4YNZ2_PHYSP	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (493 aa)
	G4YQY1_PHYSP	WD_REPEATS_REGION domain-containing protein. (464 aa)
	G4YTN5_PHYSP	CBF domain-containing protein. (580 aa)
	G4YU74_PHYSP	Brix domain-containing protein. (287 aa)
	G4YXP7_PHYSP	Uncharacterized protein. (673 aa)
	G4Z083_PHYSP	Uncharacterized protein. (922 aa)
	G4Z1F0_PHYSP	Pectate lyase. (249 aa)
	G4Z758_PHYSP	Uncharacterized protein. (1134 aa)
	G4Z9A1_PHYSP	Uncharacterized protein. (268 aa)
	G4Z9A2_PHYSP	Uncharacterized protein. (239 aa)
	G4ZQB2_PHYSP	Uncharacterized protein. (906 aa)
	G4ZVY9_PHYSP	Uncharacterized protein. (756 aa)
	G5A0L8_PHYSP	Uncharacterized protein. (1452 aa)
	G5A4V0_PHYSP	S4 RNA-binding domain-containing protein. (181 aa)
	G5A5C1_PHYSP	WD_REPEATS_REGION domain-containing protein. (978 aa)
	G5A712_PHYSP	RRP7 domain-containing protein. (256 aa)
	G5ACG5_PHYSP	Pectate lyase. (186 aa)
	G5ACG6_PHYSP	Pectate lyase. (303 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YJP4_PHYSP	G4YNZ0_PHYSP	G4YJP4	G4YNZ0	CBF domain-containing protein.	Uncharacterized protein.	0.874
G4YJP4_PHYSP	G4YNZ1_PHYSP	G4YJP4	G4YNZ1	CBF domain-containing protein.	Uncharacterized protein.	0.874
G4YJP4_PHYSP	G4YQY1_PHYSP	G4YJP4	G4YQY1	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.983
G4YJP4_PHYSP	G4YU74_PHYSP	G4YJP4	G4YU74	CBF domain-containing protein.	Brix domain-containing protein.	0.957
G4YJP4_PHYSP	G4YXP7_PHYSP	G4YJP4	G4YXP7	CBF domain-containing protein.	Uncharacterized protein.	0.911
G4YJP4_PHYSP	G4Z083_PHYSP	G4YJP4	G4Z083	CBF domain-containing protein.	Uncharacterized protein.	0.700
G4YJP4_PHYSP	G4Z1F0_PHYSP	G4YJP4	G4Z1F0	CBF domain-containing protein.	Pectate lyase.	0.700
G4YJP4_PHYSP	G4Z758_PHYSP	G4YJP4	G4Z758	CBF domain-containing protein.	Uncharacterized protein.	0.958
G4YJP4_PHYSP	G4Z9A1_PHYSP	G4YJP4	G4Z9A1	CBF domain-containing protein.	Uncharacterized protein.	0.700
G4YJP4_PHYSP	G4Z9A2_PHYSP	G4YJP4	G4Z9A2	CBF domain-containing protein.	Uncharacterized protein.	0.700
G4YJP4_PHYSP	G4ZQB2_PHYSP	G4YJP4	G4ZQB2	CBF domain-containing protein.	Uncharacterized protein.	0.985
G4YJP4_PHYSP	G4ZVY9_PHYSP	G4YJP4	G4ZVY9	CBF domain-containing protein.	Uncharacterized protein.	0.865
G4YJP4_PHYSP	G5A0L8_PHYSP	G4YJP4	G5A0L8	CBF domain-containing protein.	Uncharacterized protein.	0.973
G4YJP4_PHYSP	G5A4V0_PHYSP	G4YJP4	G5A4V0	CBF domain-containing protein.	S4 RNA-binding domain-containing protein.	0.958
G4YJP4_PHYSP	G5A5C1_PHYSP	G4YJP4	G5A5C1	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.956
G4YJP4_PHYSP	G5A712_PHYSP	G4YJP4	G5A712	CBF domain-containing protein.	RRP7 domain-containing protein.	0.953
G4YJP4_PHYSP	G5ACG5_PHYSP	G4YJP4	G5ACG5	CBF domain-containing protein.	Pectate lyase.	0.700
G4YJP4_PHYSP	G5ACG6_PHYSP	G4YJP4	G5ACG6	CBF domain-containing protein.	Pectate lyase.	0.700
G4YJP4_PHYSP	G5ACH0_PHYSP	G4YJP4	G5ACH0	CBF domain-containing protein.	Pectate lyase.	0.700
G4YNZ0_PHYSP	G4YJP4_PHYSP	G4YNZ0	G4YJP4	Uncharacterized protein.	CBF domain-containing protein.	0.874