(14 nodes) Perinuclear region of cytoplasm network (Phytophthora sojae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G4YMU2_PHYSP	Uncharacterized protein. (150 aa)
	G4YQ13_PHYSP	Protein kinase domain-containing protein; Belongs to the cyclin family. (572 aa)
	G4YQ15_PHYSP	Uncharacterized protein; Belongs to the cyclin family. (891 aa)
	G4YT67_PHYSP	Uncharacterized protein. (428 aa)
	G4YVZ7_PHYSP	HATPase_c domain-containing protein. (761 aa)
	G4Z5L7_PHYSP	Uncharacterized protein. (455 aa)
	G4Z8A4_PHYSP	SURP motif domain-containing protein. (238 aa)
	G4ZAR6_PHYSP	Uncharacterized protein. (967 aa)
	G4ZKH5_PHYSP	Uncharacterized protein. (644 aa)
	G4ZL67_PHYSP	PH domain-containing protein. (896 aa)
	G4ZYM7_PHYSP	Uncharacterized protein. (588 aa)
	G4ZYM8_PHYSP	Uncharacterized protein. (378 aa)
	G5A244_PHYSP	Uncharacterized protein. (158 aa)
	G5A2K0_PHYSP	HATPase_c domain-containing protein. (706 aa)

Your Current Organism:

Phytophthora sojae

NCBI taxonomy Id: 1094619
Other names: P. sojae strain P6497, Phytophthora sojae strain P6497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G4YQ13_PHYSP	G4YVZ7_PHYSP	G4YQ13	G4YVZ7	Protein kinase domain-containing protein; Belongs to the cyclin family.	HATPase_c domain-containing protein.	0.477
G4YQ13_PHYSP	G5A2K0_PHYSP	G4YQ13	G5A2K0	Protein kinase domain-containing protein; Belongs to the cyclin family.	HATPase_c domain-containing protein.	0.569
G4YQ15_PHYSP	G4YVZ7_PHYSP	G4YQ15	G4YVZ7	Uncharacterized protein; Belongs to the cyclin family.	HATPase_c domain-containing protein.	0.477
G4YQ15_PHYSP	G5A2K0_PHYSP	G4YQ15	G5A2K0	Uncharacterized protein; Belongs to the cyclin family.	HATPase_c domain-containing protein.	0.569
G4YVZ7_PHYSP	G4YQ13_PHYSP	G4YVZ7	G4YQ13	HATPase_c domain-containing protein.	Protein kinase domain-containing protein; Belongs to the cyclin family.	0.477
G4YVZ7_PHYSP	G4YQ15_PHYSP	G4YVZ7	G4YQ15	HATPase_c domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.477
G4ZYM7_PHYSP	G4ZYM8_PHYSP	G4ZYM7	G4ZYM8	Uncharacterized protein.	Uncharacterized protein.	0.929
G4ZYM8_PHYSP	G4ZYM7_PHYSP	G4ZYM8	G4ZYM7	Uncharacterized protein.	Uncharacterized protein.	0.929
G5A2K0_PHYSP	G4YQ13_PHYSP	G5A2K0	G4YQ13	HATPase_c domain-containing protein.	Protein kinase domain-containing protein; Belongs to the cyclin family.	0.569
G5A2K0_PHYSP	G4YQ15_PHYSP	G5A2K0	G4YQ15	HATPase_c domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.569