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| | GCA_000236165_03410 | Unannotated protein. (286 aa) |
| | GCA_000236165_03409 | Unannotated protein. (97 aa) |
| | GCA_000236165_03408 | Unannotated protein. (177 aa) |
| | hin_2 | Unannotated protein. (294 aa) |
| | GCA_000236165_03396 | Unannotated protein. (267 aa) |
| | traI_2 | Unannotated protein. (1944 aa) |
| | GCA_000236165_03379 | Unannotated protein. (173 aa) |
| | GCA_000236165_03366 | Unannotated protein. (485 aa) |
| | GCA_000236165_03365 | Unannotated protein. (395 aa) |
| | umuD_2 | Unannotated protein; Belongs to the peptidase S24 family. (168 aa) |
| | umuC_2 | Unannotated protein. (420 aa) |
| | dinB_2 | Unannotated protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (383 aa) |
| | GCA_000236165_03350 | Unannotated protein. (827 aa) |
| | hin_6 | Unannotated protein. (183 aa) |
| | xerC_4 | Unannotated protein; Belongs to the 'phage' integrase family. (291 aa) |
| | GCA_000236165_03329 | Unannotated protein. (1017 aa) |
| | A8QYS9_9GAMM | Unannotated protein. (1085 aa) |
| | hin_5 | Unannotated protein. (182 aa) |
| | mobA_2 | Unannotated protein. (934 aa) |
| | GCA_000236165_03295 | Unannotated protein. (363 aa) |
| | parC | Unannotated protein; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (750 aa) |
| | GCA_000236165_03228 | Unannotated protein. (145 aa) |
| | GCA_000236165_03216 | Unannotated protein. (48 aa) |
| | GCA_000236165_03215 | Unannotated protein. (72 aa) |
| | GCA_000236165_03212 | Unannotated protein. (663 aa) |
| | polA | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (892 aa) |
| | Int-Tn | Unannotated protein; Belongs to the 'phage' integrase family. (397 aa) |
| | recD | Unannotated protein. (1006 aa) |
| | GCA_000236165_03096 | Unannotated protein. (120 aa) |
| | hin_1 | Unannotated protein. (182 aa) |
| | GCA_000236165_03061 | Unannotated protein. (279 aa) |
| | ihfA | Unannotated protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (97 aa) |
| | mutL | Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (549 aa) |
| | mutM_1 | Unannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (271 aa) |
| | ssb | Unannotated protein. (156 aa) |
| | uvrA | Unannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (941 aa) |
| | smc | Unannotated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1164 aa) |
| | uvrC_2 | Unannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (618 aa) |
| | holC | Unannotated protein. (146 aa) |
| | ada | Unannotated protein; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Belongs to the MGMT family. (349 aa) |
| | exoA | Unannotated protein. (260 aa) |
| | xthA | Unannotated protein. (259 aa) |
| | dam | Unannotated protein. (269 aa) |
| | GCA_000236165_02269 | Unannotated protein. (843 aa) |
| | recG | Unannotated protein; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (676 aa) |
| | dnaJ | Unannotated protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] (379 aa) |
| | tag | Unannotated protein. (189 aa) |
| | GCA_000236165_02191 | Unannotated protein. (212 aa) |
| | dinB_1 | Unannotated protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (355 aa) |
| | GCA_000236165_02094 | Unannotated protein. (347 aa) |
| | GCA_000236165_02077 | Unannotated protein. (190 aa) |
| | traI_1 | Unannotated protein. (627 aa) |
| | traC_1 | Unannotated protein. (728 aa) |
| | GCA_000236165_01965 | Unannotated protein. (128 aa) |
| | GCA_000236165_01957 | Unannotated protein. (159 aa) |
| | GCA_000236165_01902 | Unannotated protein; Belongs to the 'phage' integrase family. (214 aa) |
| | GCA_000236165_01901 | Unannotated protein. (75 aa) |
| | GCA_000236165_01895 | Unannotated protein. (391 aa) |
| | dnaG | Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (574 aa) |
| | xseB | Unannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (73 aa) |
| | radA | Unannotated protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (449 aa) |
| | pilT_1 | Unannotated protein. (368 aa) |
| | smrA_1 | Unannotated protein. (181 aa) |
| | prmB | Unannotated protein; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. (305 aa) |
| | topA | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (761 aa) |
| | alkA | Unannotated protein. (305 aa) |
| | parE | Unannotated protein; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (627 aa) |
| | dnaB | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (460 aa) |
| | mutY | Unannotated protein; Adenine glycosylase active on G-A mispairs. (358 aa) |
| | recQ_2 | Unannotated protein. (607 aa) |
| | GCA_000236165_01504 | Unannotated protein; Belongs to the DNA glycosylase MPG family. (184 aa) |
| | intS | Unannotated protein; Belongs to the 'phage' integrase family. (409 aa) |
| | GCA_000236165_01438 | Unannotated protein. (167 aa) |
| | umuD_1 | Unannotated protein; Belongs to the peptidase S24 family. (168 aa) |
| | umuC_1 | Unannotated protein. (420 aa) |
| | GCA_000236165_01393 | Unannotated protein. (835 aa) |
| | ku | Unannotated protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (276 aa) |
| | mutM_2 | Unannotated protein. (268 aa) |
| | GCA_000236165_01355 | Unannotated protein. (362 aa) |
| | uvrD | Unannotated protein. (721 aa) |
| | addA | Unannotated protein; Belongs to the helicase family. UvrD subfamily. (1080 aa) |
| | mutS | Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (840 aa) |
| | recA | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (348 aa) |
| | ruvC | Unannotated protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (172 aa) |
| | ruvA | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (199 aa) |
| | GCA_000236165_01208 | Unannotated protein. (163 aa) |
| | holA | Unannotated protein. (341 aa) |
| | rarA | Unannotated protein. (433 aa) |
| | GCA_000236165_01058 | Unannotated protein. (181 aa) |
| | ruvB | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (336 aa) |
| | GCA_000236165_01013 | Unannotated protein. (272 aa) |
| | GCA_000236165_00971 | Unannotated protein. (152 aa) |
| | GCA_000236165_00946 | Unannotated protein; Belongs to the UPF0310 family. (301 aa) |
| | GCA_000236165_00919 | Unannotated protein. (55 aa) |
| | mutH | Unannotated protein; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family. (226 aa) |
| | GCA_000236165_00864 | Unannotated protein; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. (250 aa) |
| | mutT | Unannotated protein; Belongs to the Nudix hydrolase family. (134 aa) |
| | recJ | Unannotated protein. (580 aa) |
| | GCA_000236165_00802 | Unannotated protein. (274 aa) |
| | gyrA | Unannotated protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (865 aa) |
| | ycfH | Unannotated protein. (258 aa) |
| | holB | Unannotated protein. (320 aa) |
| | dnaQ | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (233 aa) |
| | nrdA | Unannotated protein; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (941 aa) |
| | nrdB | Unannotated protein; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. (364 aa) |
| | rdgC | Unannotated protein; May be involved in recombination. Belongs to the RdgC family. (305 aa) |
| | GCA_000236165_00636 | Unannotated protein. (407 aa) |
| | dnaE | Unannotated protein. (1146 aa) |
| | ligA | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (673 aa) |
| | rmuC | Unannotated protein. (406 aa) |
| | mfd | Unannotated protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1151 aa) |
| | recO | Unannotated protein; Involved in DNA repair and RecF pathway recombination. (230 aa) |
| | ybgI | Unannotated protein. (252 aa) |
| | xseA | Unannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (443 aa) |
| | GCA_000236165_00467 | Unannotated protein. (109 aa) |
| | GCA_000236165_00414 | Unannotated protein; Belongs to the 'phage' integrase family. (386 aa) |
| | GCA_000236165_00372 | Unannotated protein. (127 aa) |
| | GCA_000236165_00340 | Unannotated protein. (267 aa) |
| | GCA_000236165_00339 | Unannotated protein. (299 aa) |
| | GCA_000236165_00326 | Unannotated protein; Belongs to the 'phage' integrase family. (324 aa) |
| | GCA_000236165_00321 | Unannotated protein. (91 aa) |
| | GCA_000236165_00276 | Unannotated protein. (118 aa) |
| | GCA_000236165_00256 | Unannotated protein. (563 aa) |
| | recR | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (197 aa) |
| | hda | Unannotated protein; Belongs to the DnaA family. HdA subfamily. (230 aa) |
| | recN | Unannotated protein; May be involved in recombinational repair of damaged DNA. (554 aa) |
| | rep | Unannotated protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (667 aa) |
| | nth | Unannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (210 aa) |
| | priA | Unannotated protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (758 aa) |
| | ihfB | Unannotated protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (103 aa) |
| | rnt | Unannotated protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. (209 aa) |
| | tdk | Unannotated protein. (203 aa) |
| | gyrB | Unannotated protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (805 aa) |
| | recF | Unannotated protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (355 aa) |
| | dnaN | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] (367 aa) |
| | dnaA | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (460 aa) |
| | GCA_000236165_03477 | Unannotated protein; Belongs to the UPF0310 family. (142 aa) |
| | GCA_000236165_03415 | Unannotated protein. (123 aa) |
| | GCA_000236165_03414 | Unannotated protein. (61 aa) |
| | GCA_000236165_03455 | Unannotated protein. (500 aa) |
| | GCA_000236165_03413 | Unannotated protein. (100 aa) |
