(38 nodes) Phenylalanine, tyrosine and tryptophan biosynthesis network (Hyaloscypha bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2J6SLK8	PLP-dependent transferase. (535 aa)
	A0A2J6T4Q6	Amino_oxidase domain-containing protein. (355 aa)
	A0A2J6T4H0	FtsJ domain-containing protein. (365 aa)
	A0A2J6T3Q5	Uncharacterized protein. (108 aa)
	A0A2J6T336	Aldolase. (677 aa)
	A0A2J6T305	Zn(2)-C6 fungal-type domain-containing protein. (830 aa)
	A0A2J6SZ54	Chorismate synthase. (435 aa)
	A0A2J6SYD5	Phospho-2-dehydro-3-deoxyheptonate aldolase. (382 aa)
	A0A2J6SWQ9	Quinate 5-dehydrogenase, protein. (313 aa)
	A0A2J6STL4	Uncharacterized protein. (804 aa)
	A0A2J6STH3	Shikimate_dh_N domain-containing protein. (322 aa)
	A0A2J6SSG2	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities. (763 aa)
	A0A2J6SRR2	Tryptophan synthase. (723 aa)
	A0A2J6SR56	PLP-dependent transferase. (473 aa)
	A0A2J6SPL2	PLP-dependent transferase. (617 aa)
	A0A2J6SNG9	Phospho-2-dehydro-3-deoxyheptonate aldolase. (376 aa)
	A0A2J6SJQ4	Uncharacterized protein. (104 aa)
	A0A2J6SJN6	Phospho-2-dehydro-3-deoxyheptonate aldolase; Belongs to the class-II DAHP synthase family. (493 aa)
	A0A2J6SJJ0	FtsJ domain-containing protein. (362 aa)
	A0A2J6SJ57	Histidinol-phosphate aminotransferase. (430 aa)
	A0A2J6SEJ8	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family. (431 aa)
	A0A2J6TM48	Anthranilate phosphoribosyltransferas-like protein. (416 aa)
	A0A2J6TMW5	Uncharacterized protein. (201 aa)
	A0A2J6TPX8	PDT-domain-containing protein. (333 aa)
	A0A2J6TQI1	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family. (1585 aa)
	A0A2J6TSG2	Anthranilate synthase component. (535 aa)
	A0A2J6TBD4	3-dehydroquinate synthase. (380 aa)
	A0A2J6T9N9	Aspartate aminotransferase. (424 aa)
	A0A2J6T977	Dehydroquinate synthase-like protein. (394 aa)
	A0A2J6T720	PLP-dependent transferase. (383 aa)
	A0A2J6TID9	Zn(2)-C6 fungal-type domain-containing protein. (675 aa)
	A0A2J6THP7	Aspartate aminotransferase. (417 aa)
	A0A2J6THN6	Chorismate mutase. (263 aa)
	A0A2J6TF13	Amidase signature enzyme. (563 aa)
	A0A2J6TER7	Flavin-containing amine oxidase. (595 aa)
	A0A2J6TCT5	Shikimate_dh_N domain-containing protein. (90 aa)
	A0A2J6TCM9	PLP-dependent transferase. (502 aa)
	A0A2J6TCM6	Uncharacterized protein. (328 aa)

Your Current Organism:

Hyaloscypha bicolor

NCBI taxonomy Id: 1095630
Other names: H. bicolor E, Hyaloscypha bicolor E

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2J6SEJ8	A0A2J6SJ57	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Histidinol-phosphate aminotransferase.	0.990
A0A2J6SEJ8	A0A2J6SJJ0	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	FtsJ domain-containing protein.	0.527
A0A2J6SEJ8	A0A2J6SLK8	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	PLP-dependent transferase.	0.871
A0A2J6SEJ8	A0A2J6SPL2	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	PLP-dependent transferase.	0.754
A0A2J6SEJ8	A0A2J6SR56	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	PLP-dependent transferase.	0.754
A0A2J6SEJ8	A0A2J6SRR2	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Tryptophan synthase.	0.842
A0A2J6SEJ8	A0A2J6SSG2	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.948
A0A2J6SEJ8	A0A2J6STH3	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Shikimate_dh_N domain-containing protein.	0.527
A0A2J6SEJ8	A0A2J6STL4	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Uncharacterized protein.	0.527
A0A2J6SEJ8	A0A2J6SWQ9	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Quinate 5-dehydrogenase, protein.	0.562
A0A2J6SEJ8	A0A2J6SZ54	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Chorismate synthase.	0.987
A0A2J6SEJ8	A0A2J6T336	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Aldolase.	0.527
A0A2J6SEJ8	A0A2J6T4H0	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	FtsJ domain-containing protein.	0.527
A0A2J6SEJ8	A0A2J6T720	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	PLP-dependent transferase.	0.868
A0A2J6SEJ8	A0A2J6T977	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Dehydroquinate synthase-like protein.	0.562
A0A2J6SEJ8	A0A2J6T9N9	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Aspartate aminotransferase.	0.893
A0A2J6SEJ8	A0A2J6TBD4	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	3-dehydroquinate synthase.	0.562
A0A2J6SEJ8	A0A2J6TCM6	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Uncharacterized protein.	0.878
A0A2J6SEJ8	A0A2J6TCM9	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	PLP-dependent transferase.	0.791
A0A2J6SEJ8	A0A2J6TCT5	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	Shikimate_dh_N domain-containing protein.	0.562